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Statistics on protein trees

The protein tree pipeline is described at the following page.

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Size of the trees (per root node)

Species# Trees% Trees# Genes% GenesMin # genesMax # genesAverage # genesMin # speciesMax # speciesAverage # speciesAverage # genes per species
Animals and Fungi (Opisthokonta)2181
320124
21106146.826861.72.3
S.cerevisiae (Saccharomyces cerevisiae)384
1202
2343.1111.03.1
Bilateral animals (Bilateria)3031
475822
21231157.026759.22.5
Chordates (Chordata)1140
93561
296682.126544.81.7
Ciona sea squirts (Ciona)1443
3989
2532.8222.01.4
C.savignyi (Ciona savignyi)85
224
262.6111.02.6
C.intestinalis (Ciona intestinalis)152
413
2122.7111.02.7
Vertebrates (Vertebrata)747
73363
2113398.226342.92.0
Lamprey (Petromyzon marinus)49
190
2283.9111.03.9
Bony vertebrates (Euteleostomi)1998
116049
2140558.126232.31.8
Lobe-finned fish (Sarcopterygii)205
6978
251834.025123.01.8
Coelacanth (Latimeria chalumnae)35
287
2288.2111.08.2
Tetrapods (Tetrapoda)131
15265
2997116.525024.33.8
Amniotes (Amniota)590
23365
2117039.624917.41.8
Mammals (Mammalia)323
14254
299144.124215.71.9
Marsupials and Placental mammals (Theria)389
9709
233225.024118.51.5
Placental mammals (Eutheria)808
13078
255016.223811.71.3
Armadillo (Dasypus novemcinctus)23
117
2205.1111.05.1
Sloth (Choloepus hoffmanni)9
22
232.4111.02.4
African mammals (Afrotheria)9
25
272.8232.21.2
Hyrax (Procavia capensis)2
5
232.5111.02.5
Elephant (Loxodonta africana)3
18
2146.0111.06.0
Tenrec (Echinops telfairi)29
105
2153.6111.03.6
Boreoeutheria409
2561
2986.32274.81.3
Laurasiatherian mammals (Laurasiatheria)77
215
2112.82112.51.1
Hedgehog (Erinaceus europaeus)9
19
232.1111.02.1
Shrew (Sorex araneus)11
39
2103.5111.03.5
Megabat (Pteropus vampyrus)5
10
222.0111.02.0
Microbat (Myotis lucifugus)4
18
284.5111.04.5
Carnivores (Carnivora)9
21
242.3232.21.0
Caniforms (Caniformia)15
36
272.4232.11.1
Ferret (Mustela putorius furo)8
16
222.0111.02.0
Panda (Ailuropoda melanoleuca)1
2
222.0111.02.0
Dog (Canis lupus familiaris)9
20
242.2111.02.2
Cat (Felis catus)2
5
232.5111.02.5
Horse (Equus caballus)79
590
2387.5111.07.5
Cetaceans and Even-toed ungulates (Cetartiodactyla)20
50
262.5232.11.1
Pig (Sus scrofa)13
29
242.2111.02.2
Bovids (Bovidae)39
116
2123.0222.01.5
Sheep (Ovis aries)12
30
252.5111.02.5
Dolphin (Tursiops truncatus)2
6
243.0111.03.0
Alpaca (Vicugna pacos)6
16
262.7111.02.7
Primates and Rodents (Euarchontoglires)134
519
2313.92123.41.1
Rodents and Rabbits (Glires)5
12
232.4232.41.0
Rodents (Rodentia)2
14
2127.0243.02.0
Squirrels and Old World rodents (Sciurognathi)8
21
232.6232.51.1
Kangaroo rat (Dipodomys ordii)6
20
293.3111.03.3
Old World rodents (Murinae)111
639
2785.8222.02.9
Mouse (Mus musculus)37
210
2435.7111.05.7
Rat (Rattus norvegicus)24
77
293.2111.03.2
Guinea Pig (Cavia porcellus)2
4
222.0111.02.0
Pika (Ochotona princeps)10
24
242.4111.02.4
Rabbit (Oryctolagus cuniculus)5
50
33410.0111.010.0
Primates (Primates)104
437
2184.22113.91.1
Wet nose lemurs (Strepsirrhini)1
4
444.0222.02.0
Bushbaby (Otolemur garnettii)1
6
666.0111.06.0
Mouse Lemur (Microcebus murinus)11
26
252.4111.02.4
Dry-nosed primates (Haplorrhini)22
91
2104.1294.01.1
Simians (Simiiformes)215
1825
22868.5283.91.7
Marmoset (Callithrix jacchus)6
15
242.5111.02.5
Apes and Old World monkeys (Catarrhini)257
995
2193.9273.21.2
Old World monkeys (Cercopithecinae)6
14
232.3222.01.2
Macaque (Macaca mulatta)28
72
292.6111.02.6
Apes (Hominoidea)188
592
2173.1252.91.1
Great apes (Hominidae)172
451
2132.6242.31.1
Orangutan (Pongo abelii)18
46
2122.6111.02.6
Hominines (Homininae)100
250
292.5232.21.1
Chimpanzee (Pan troglodytes)8
18
232.2111.02.2
Gorilla (Gorilla gorilla gorilla)14
29
232.1111.02.1
Tarsier (Tarsius syrichta)11
32
262.9111.02.9
Tree Shrew (Tupaia belangeri)14
45
263.2111.03.2
Marsupials (Marsupialia)35
187
2455.3232.12.4
Opossum (Monodelphis domestica)32
260
2558.1111.08.1
Wallaby (Macropus eugenii)3
7
232.3111.02.3
Tasmanian devil (Sarcophilus harrisii)9
20
232.2111.02.2
Platypus (Ornithorhynchus anatinus)61
504
2438.3111.08.3
Reptiles and birds (Sauria)42
202
2374.8273.11.8
Anole Lizard (Anolis carolinensis)33
244
2307.4111.07.4
Birds and turtles (Testudines + Archosauria group)64
336
2725.2263.21.5
Chinese softshell turtle (Pelodiscus sinensis)33
314
2489.5111.09.5
Birds (Neognathae)337
1235
22453.7252.71.2
Turkeys (Phasianidae)20
132
2416.6222.03.3
Chicken (Gallus gallus)10
101
23910.1111.010.1
Turkey (Meleagris gallopavo)1
3
333.0111.03.0
Perching birds (Passeriformes)138
291
282.1222.01.1
Flycatcher (Ficedula albicollis)21
48
232.3111.02.3
Zebra Finch (Taeniopygia guttata)12
41
283.4111.03.4
Duck (Anas platyrhynchos)3
9
253.0111.03.0
X.tropicalis (Xenopus tropicalis)57
570
23410.0111.010.0
Ray-finned fishes (Neopterygii)275
3051
231611.12115.51.7
Spotted gar (Lepisosteus oculatus)13
33
252.5111.02.5
Teleost fishes (Clupeocephala)305
2387
21527.82104.61.6
Teleost fishes (Otophysa)64
175
2142.7222.01.4
Zebrafish (Danio rerio)90
495
2445.5111.05.5
Cave fish (Astyanax mexicanus)20
46
242.3111.02.3
Teleost fishes (Acanthomorphata)329
1064
2343.2282.71.2
Teleost fishes (Percomorphaceae)157
676
2574.3273.11.3
Teleost fishes (Percomorpharia)9
19
232.1232.11.0
Puffers (Tetraodontidae)6
13
232.2222.01.1
Fugu (Takifugu rubripes)1
2
222.0111.02.0
Tetraodon (Tetraodon nigroviridis)22
60
272.7111.02.7
Stickleback (Gasterosteus aculeatus)17
64
2173.8111.03.8
Teleost fishes (Ovalentaria)32
252
2607.9242.52.9
Silverside fishes (Atherinomorphae)9
41
2184.6222.02.3
Medaka (Oryzias latipes)85
353
2234.2111.04.2
Live-bearing aquarium fishes (Poeciliinae)8
16
222.0222.01.0
Amazon molly (Poecilia formosa)1
2
222.0111.02.0
Platyfish (Xiphophorus maculatus)1
2
222.0111.02.0
Tilapia (Oreochromis niloticus)16
57
2233.6111.03.6
Cod (Gadus morhua)10
29
272.9111.02.9
Arthropods and nematodes (Ecdysozoa)88
387
2334.4222.02.2
C.elegans (Caenorhabditis elegans)1261
6810
2515.4111.05.4
Fruitfly (Drosophila melanogaster)494
1936
2443.9111.03.9