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Statistics on protein trees

The protein tree pipeline is described at the following page.

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Size of the trees (per root node)

Species# Trees% Trees# Genes% GenesMin # genesMax # genesAverage # genesMin # speciesMax # speciesAverage # speciesAverage # genes per species
Animals and Fungi (Opisthokonta)2184
321659
21167147.326962.52.3
S.cerevisiae (Saccharomyces cerevisiae)384
1176
2343.1111.03.1
Bilateral animals (Bilateria)3029
484651
21231160.026860.32.5
Arthropods and nematodes (Ecdysozoa)90
394
2334.4222.02.2
C.elegans (Caenorhabditis elegans)1260
6865
2555.4111.05.4
Fruitfly (Drosophila melanogaster)493
1949
2444.0111.04.0
Chordates (Chordata)1166
98565
2114184.526645.01.7
Ciona sea squirts (Ciona)1443
4009
2532.8222.01.4
C.intestinalis (Ciona intestinalis)156
424
2152.7111.02.7
C.savignyi (Ciona savignyi)85
220
262.6111.02.6
Vertebrates (Vertebrata)733
75015
21194102.326443.82.1
Lamprey (Petromyzon marinus)47
199
2284.2111.04.2
Bony vertebrates (Euteleostomi)2022
115077
2104156.926332.71.7
Lobe-finned fish (Sarcopterygii)216
6219
229928.825221.61.6
Coelacanth (Latimeria chalumnae)34
269
2287.9111.07.9
Tetrapods (Tetrapoda)140
14620
2805104.425124.03.1
Amniotes (Amniota)589
24162
2120141.025018.01.7
Reptiles and birds (Sauria)39
301
2697.7273.03.3
Anole Lizard (Anolis carolinensis)31
231
2307.5111.07.5
Birds and turtles (Archelosauria)58
598
231610.3263.32.6
Chinese softshell turtle (Pelodiscus sinensis)35
279
2358.0111.08.0
Birds (Neognathae)250
814
2323.3252.91.1
Fowls (Galloanserae)81
189
2202.3232.11.1
Duck (Anas platyrhynchos)3
9
253.0111.03.0
Turkeys (Phasianidae)21
147
2427.0222.03.5
Chicken (Gallus gallus)12
112
2399.3111.09.3
Turkey (Meleagris gallopavo)1
3
333.0111.03.0
Perching birds (Passeriformes)138
319
2272.3222.01.2
Zebra Finch (Taeniopygia guttata)13
47
2113.6111.03.6
Flycatcher (Ficedula albicollis)19
43
232.3111.02.3
Mammals (Mammalia)341
14832
292243.524315.41.9
Marsupials and Placental mammals (Theria)418
11220
233626.824218.51.6
Placental mammals (Eutheria)839
14082
223516.823912.11.3
African mammals (Afrotheria)7
20
272.9232.31.2
Tenrec (Echinops telfairi)32
114
2153.6111.03.6
Elephant (Loxodonta africana)2
16
2148.0111.08.0
Hyrax (Procavia capensis)2
5
232.5111.02.5
Armadillo (Dasypus novemcinctus)23
139
2216.0111.06.0
Sloth (Choloepus hoffmanni)9
21
232.3111.02.3
Placental mammals (Boreoeutheria)431
2486
2595.82284.71.3
Primates and Rodents (Euarchontoglires)145
623
2304.32153.51.2
Tree Shrew (Tupaia belangeri)12
43
293.6111.03.6
Primates (Primates)100
654
22596.52123.91.3
Dry-nosed primates (Haplorrhini)25
135
2285.42104.61.1
Tarsier (Tarsius syrichta)11
34
263.1111.03.1
Simians (Simiiformes)208
1482
21827.1294.01.5
Marmoset (Callithrix jacchus)6
15
242.5111.02.5
Apes and Old World monkeys (Catarrhini)290
1307
2494.5283.51.3
Old World monkeys (Cercopithecinae)34
69
232.0222.01.0
Macaque (Macaca mulatta)22
53
242.4111.02.4
Apes (Hominoidea)177
527
2173.0252.71.1
Great apes (Hominidae)164
413
292.5242.21.1
Orangutan (Pongo abelii)19
49
2122.6111.02.6
Hominines (Homininae)84
238
2342.8232.11.3
Gorilla (Gorilla gorilla gorilla)14
29
232.1111.02.1
Chimpanzee (Pan troglodytes)7
16
232.3111.02.3
Wet nose lemurs (Strepsirrhini)1
4
444.0222.02.0
Bushbaby (Otolemur garnettii)1
6
666.0111.06.0
Mouse Lemur (Microcebus murinus)10
24
252.4111.02.4
Rodents and Rabbits (Glires)10
41
274.1232.31.9
Rodents (Rodentia)3
7
232.3222.01.2
Guinea Pig (Cavia porcellus)3
7
232.3111.02.3
Squirrels and Old World rodents (Sciurognathi)9
23
252.6232.21.1
Kangaroo rat (Dipodomys ordii)5
17
293.4111.03.4
Old World rodents (Murinae)163
588
2363.6222.01.8
Rat (Rattus norvegicus)23
123
2265.3111.05.3
Mouse (Mus musculus)144
522
2173.6111.03.6
Rabbit (Oryctolagus cuniculus)6
53
2348.8111.08.8
Pika (Ochotona princeps)10
24
242.4111.02.4
Laurasiatherian mammals (Laurasiatheria)82
291
2633.52112.51.5
Bats (Chiroptera)1
4
444.0222.02.0
Microbat (Myotis lucifugus)3
7
232.3111.02.3
Megabat (Pteropus vampyrus)6
12
222.0111.02.0
Insectivore mammals (Insectivora)1
2
222.0222.01.0
Shrew (Sorex araneus)13
44
2103.4111.03.4
Hedgehog (Erinaceus europaeus)8
17
232.1111.02.1
Horse (Equus caballus)82
631
2457.7111.07.7
Cetaceans and Even-toed ungulates (Cetartiodactyla)21
61
282.9232.11.3
Dolphin (Tursiops truncatus)2
6
243.0111.03.0
Bovids (Bovidae)43
128
2123.0222.01.5
Sheep (Ovis aries)12
31
252.6111.02.6
Pig (Sus scrofa)10
23
242.3111.02.3
Alpaca (Vicugna pacos)6
16
262.7111.02.7
Carnivores (Carnivora)11
25
242.3232.21.0
Caniforms (Caniformia)15
36
272.4232.11.1
Panda (Ailuropoda melanoleuca)1
2
222.0111.02.0
Dog (Canis lupus familiaris)8
18
242.2111.02.2
Ferret (Mustela putorius furo)9
18
222.0111.02.0
Cat (Felis catus)1
2
222.0111.02.0
Marsupials (Marsupialia)34
146
2304.3232.11.9
Opossum (Monodelphis domestica)37
283
2507.6111.07.6
Tasmanian devil (Sarcophilus harrisii)9
19
232.1111.02.1
Wallaby (Macropus eugenii)3
7
232.3111.02.3
Platypus (Ornithorhynchus anatinus)54
383
2437.1111.07.1
X.tropicalis (Xenopus tropicalis)55
670
23912.2111.012.2
Ray-finned fishes (Neopterygii)274
2970
230610.82115.61.7
Spotted gar (Lepisosteus oculatus)15
41
262.7111.02.7
Teleost fishes (Clupeocephala)335
2654
21547.92104.61.7
Teleost fishes (Acanthomorphata)311
1014
2223.3282.71.2
Teleost fishes (Percomorphaceae)162
819
2805.1273.11.4
Teleost fishes (Eupercaria)5
11
232.2232.21.0
Stickleback (Gasterosteus aculeatus)17
54
2113.2111.03.2
Puffers (Tetraodontidae)6
13
232.2222.01.1
Tetraodon (Tetraodon nigroviridis)22
60
272.7111.02.7
Fugu (Takifugu rubripes)1
2
222.0111.02.0
Teleost fishes (Ovalentaria)41
336
2718.2242.73.0
Silverside fishes (Atherinomorphae)41
131
2223.2232.11.6
Medaka (Oryzias latipes)77
313
2234.1111.04.1
Live-bearing aquarium fishes (Poeciliinae)24
60
2132.5222.01.2
Platyfish (Xiphophorus maculatus)1
2
222.0111.02.0
Amazon molly (Poecilia formosa)10
34
293.4111.03.4
Tilapia (Oreochromis niloticus)13
77
2295.9111.05.9
Cod (Gadus morhua)9
27
273.0111.03.0
Teleost fishes (Otophysa)65
167
2132.6222.01.3
Cave fish (Astyanax mexicanus)20
48
242.4111.02.4
Zebrafish (Danio rerio)109
668
2416.1111.06.1