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Statistics on protein trees

The protein tree pipeline is described at the following page.

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Size of the trees (per root node)

Species# Trees% Trees# Genes% GenesMin # genesMax # genesAverage # genesMin # speciesMax # speciesAverage # speciesAverage # genes per species
Animals and Fungi (Opisthokonta)2179
324528
21311148.926962.62.3
Bilateral animals (Bilateria)3038
482034
21360158.726860.12.5
Arthropods and nematodes (Ecdysozoa)90
397
2334.4222.02.2
C.elegans (Caenorhabditis elegans)1265
6909
2555.5111.05.5
Fruitfly (Drosophila melanogaster)494
1916
2443.9111.03.9
Chordates (Chordata)1148
96302
2114083.926645.41.7
Vertebrates (Vertebrata)756
76881
21179101.726443.02.1
Bony vertebrates (Euteleostomi)1986
116798
298558.826333.21.8
Ray-finned fishes (Neopterygii)274
3137
230711.42115.71.7
Spotted gar (Lepisosteus oculatus)14
36
252.6111.02.6
Teleost fishes (Clupeocephala)327
2642
21568.12104.71.7
Teleost fishes (Otophysa)64
174
2132.7222.01.4
Zebrafish (Danio rerio)109
654
2416.0111.06.0
Cave fish (Astyanax mexicanus)18
44
232.4111.02.4
Teleost fishes (Acanthomorphata)302
1045
2413.5282.71.3
Teleost fishes (Percomorphaceae)169
850
2805.0273.11.4
Teleost fishes (Ovalentaria)39
324
2718.3242.63.0
Tilapia (Oreochromis niloticus)12
75
2306.2111.06.2
Silverside fishes (Atherinomorphae)42
124
2223.0232.11.4
Live-bearing aquarium fishes (Poeciliinae)24
80
2223.3222.01.7
Platyfish (Xiphophorus maculatus)1
2
222.0111.02.0
Amazon molly (Poecilia formosa)10
34
293.4111.03.4
Medaka (Oryzias latipes)77
323
2234.2111.04.2
Teleost fishes (Eupercaria)6
13
232.2232.21.0
Puffers (Tetraodontidae)6
13
232.2222.01.1
Fugu (Takifugu rubripes)1
2
222.0111.02.0
Tetraodon (Tetraodon nigroviridis)23
62
272.7111.02.7
Stickleback (Gasterosteus aculeatus)17
58
2153.4111.03.4
Cod (Gadus morhua)10
57
2215.7111.05.7
Lobe-finned fish (Sarcopterygii)209
6271
229830.025221.92.0
Coelacanth (Latimeria chalumnae)40
325
2288.1111.08.1
Tetrapods (Tetrapoda)130
14213
2985109.325124.73.5
X.tropicalis (Xenopus tropicalis)55
640
23711.6111.011.6
Amniotes (Amniota)573
25122
2120443.825018.41.8
Reptiles and birds (Sauria)44
341
2737.8273.03.0
Anole Lizard (Anolis carolinensis)31
221
2307.1111.07.1
Birds and turtles (Archelosauria)58
305
2725.3263.31.4
Chinese softshell turtle (Pelodiscus sinensis)35
282
2348.1111.08.1
Birds (Neognathae)251
1032
22454.1253.01.3
Perching birds (Passeriformes)140
295
282.1222.01.1
Zebra Finch (Taeniopygia guttata)12
45
2143.8111.03.8
Flycatcher (Ficedula albicollis)18
43
232.4111.02.4
Fowls (Galloanserae)80
187
2202.3232.11.1
Turkeys (Phasianidae)21
136
2416.5222.03.2
Chicken (Gallus gallus)10
103
23910.3111.010.3
Turkey (Meleagris gallopavo)1
3
333.0111.03.0
Duck (Anas platyrhynchos)3
9
253.0111.03.0
Mammals (Mammalia)331
13947
299842.124315.51.8
Platypus (Ornithorhynchus anatinus)67
484
2437.2111.07.2
Marsupials and Placental mammals (Theria)391
11125
258428.524219.11.6
Placental mammals (Eutheria)796
13723
238817.223912.21.3
Sloth (Choloepus hoffmanni)9
21
232.3111.02.3
Armadillo (Dasypus novemcinctus)23
138
2206.0111.06.0
Placental mammals (Boreoeutheria)390
2188
2475.62244.71.2
Primates and Rodents (Euarchontoglires)134
566
2334.22153.71.1
Tree Shrew (Tupaia belangeri)14
43
263.1111.03.1
Rodents and Rabbits (Glires)5
15
263.0232.41.2
Pika (Ochotona princeps)10
24
242.4111.02.4
Rabbit (Oryctolagus cuniculus)6
32
2145.3111.05.3
Rodents (Rodentia)1
2
222.0222.01.0
Guinea Pig (Cavia porcellus)2
4
222.0111.02.0
Squirrels and Old World rodents (Sciurognathi)8
18
232.2232.11.1
Old World rodents (Murinae)130
716
2795.5222.02.8
Rat (Rattus norvegicus)21
82
2223.9111.03.9
Mouse (Mus musculus)32
183
2435.7111.05.7
Kangaroo rat (Dipodomys ordii)5
17
293.4111.03.4
Primates (Primates)99
417
2264.22123.91.1
Wet nose lemurs (Strepsirrhini)1
4
444.0222.02.0
Bushbaby (Otolemur garnettii)2
8
264.0111.04.0
Mouse Lemur (Microcebus murinus)10
24
252.4111.02.4
Dry-nosed primates (Haplorrhini)23
107
2114.72104.51.1
Tarsier (Tarsius syrichta)11
33
263.0111.03.0
Simians (Simiiformes)208
1797
22958.6294.01.6
Marmoset (Callithrix jacchus)6
15
242.5111.02.5
Apes and Old World monkeys (Catarrhini)285
1192
2324.2283.51.2
Old World monkeys (Cercopithecinae)36
75
232.1232.01.0
Macaque (Macaca mulatta)30
74
262.5111.02.5
Apes (Hominoidea)175
526
2173.0252.71.1
Great apes (Hominidae)163
413
2102.5242.31.1
Orangutan (Pongo abelii)18
46
2122.6111.02.6
Hominines (Homininae)76
226
2353.0232.11.3
Gorilla (Gorilla gorilla gorilla)15
31
232.1111.02.1
Chimpanzee (Pan troglodytes)7
16
232.3111.02.3
Human (Homo sapiens)2
5
232.5111.02.5
Laurasiatherian mammals (Laurasiatheria)81
272
2473.42112.51.4
Bats (Chiroptera)1
4
444.0222.02.0
Microbat (Myotis lucifugus)4
12
253.0111.03.0
Megabat (Pteropus vampyrus)6
12
222.0111.02.0
Cetaceans and Even-toed ungulates (Cetartiodactyla)21
52
262.5232.11.1
Dolphin (Tursiops truncatus)2
6
243.0111.03.0
Pig (Sus scrofa)11
25
242.3111.02.3
Alpaca (Vicugna pacos)6
16
262.7111.02.7
Bovids (Bovidae)38
114
2123.0222.01.5
Sheep (Ovis aries)9
25
252.8111.02.8
Shrew (Sorex araneus)12
41
2103.4111.03.4
Hedgehog (Erinaceus europaeus)11
27
252.5111.02.5
Carnivores (Carnivora)9
19
232.1232.11.0
Cat (Felis catus)1
2
222.0111.02.0
Caniforms (Caniformia)16
38
272.4232.11.1
Dog (Canis lupus familiaris)9
20
242.2111.02.2
Ferret (Mustela putorius furo)8
16
222.0111.02.0
Panda (Ailuropoda melanoleuca)1
2
222.0111.02.0
Horse (Equus caballus)85
595
2407.0111.07.0
African mammals (Afrotheria)8
23
272.9232.21.2
Hyrax (Procavia capensis)2
5
232.5111.02.5
Tenrec (Echinops telfairi)32
118
2153.7111.03.7
Elephant (Loxodonta africana)3
18
2146.0111.06.0
Marsupials (Marsupialia)31
120
2283.9232.11.9
Wallaby (Macropus eugenii)3
7
232.3111.02.3
Tasmanian devil (Sarcophilus harrisii)10
30
283.0111.03.0
Opossum (Monodelphis domestica)32
266
2518.3111.08.3
Lamprey (Petromyzon marinus)47
157
2143.3111.03.3
Ciona sea squirts (Ciona)1439
3994
2532.8222.01.4
C.savignyi (Ciona savignyi)86
224
262.6111.02.6
C.intestinalis (Ciona intestinalis)157
428
2152.7111.02.7
S.cerevisiae (Saccharomyces cerevisiae)381
1164
2343.1111.03.1