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Statistics on protein trees

The protein tree pipeline is described at the following page.

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Size of the trees (per root node)

Species# Trees% Trees# Genes% GenesMin # genesMax # genesAverage # genesMin # speciesMax # speciesAverage # speciesAverage # genes per species
Animals and Fungi (Opisthokonta)2181
324005
21410148.626962.52.3
S.cerevisiae (Saccharomyces cerevisiae)385
1205
2343.1111.03.1
Bilateral animals (Bilateria)3057
487089
21288159.326860.02.5
Arthropods and nematodes (Ecdysozoa)89
379
2334.3222.02.1
C.elegans (Caenorhabditis elegans)1262
6876
2515.4111.05.4
Fruitfly (Drosophila melanogaster)497
1923
2443.9111.03.9
Chordates (Chordata)1151
95771
2112583.226645.31.7
Ciona sea squirts (Ciona)1436
3974
2532.8222.01.4
C.savignyi (Ciona savignyi)86
223
262.6111.02.6
C.intestinalis (Ciona intestinalis)154
418
2152.7111.02.7
Vertebrates (Vertebrata)733
74959
21174102.326443.52.0
Bony vertebrates (Euteleostomi)2021
114869
299556.826332.71.7
Ray-finned fishes (Neopterygii)283
3016
233510.72115.51.7
Spotted gar (Lepisosteus oculatus)17
46
262.7111.02.7
Teleost fishes (Clupeocephala)321
2489
21437.82104.71.6
Teleost fishes (Otophysa)65
168
2142.6222.01.3
Zebrafish (Danio rerio)91
571
2436.3111.06.3
Cave fish (Astyanax mexicanus)22
50
242.3111.02.3
Teleost fishes (Acanthomorphata)319
1185
2583.7282.81.3
Teleost fishes (Percomorphaceae)161
809
2805.0273.11.4
Teleost fishes (Eupercaria)6
13
232.2232.21.0
Stickleback (Gasterosteus aculeatus)18
69
2153.8111.03.8
Puffers (Tetraodontidae)6
13
232.2222.01.1
Fugu (Takifugu rubripes)1
2
222.0111.02.0
Tetraodon (Tetraodon nigroviridis)22
60
272.7111.02.7
Teleost fishes (Ovalentaria)40
327
2718.2242.63.0
Tilapia (Oreochromis niloticus)14
81
2315.8111.05.8
Silverside fishes (Atherinomorphae)42
125
2223.0232.11.5
Medaka (Oryzias latipes)77
323
2234.2111.04.2
Live-bearing aquarium fishes (Poeciliinae)23
67
2132.9222.01.5
Amazon molly (Poecilia formosa)10
34
293.4111.03.4
Platyfish (Xiphophorus maculatus)1
2
222.0111.02.0
Cod (Gadus morhua)8
49
2206.1111.06.1
Lobe-finned fish (Sarcopterygii)213
6691
236831.425222.51.7
Tetrapods (Tetrapoda)136
14446
2974106.225124.23.5
Amniotes (Amniota)571
24930
2117443.724918.31.8
Reptiles and birds (Sauria)41
278
2676.8273.02.8
Birds and turtles (Testudines + Archosauria group)66
325
2724.9263.21.4
Chinese softshell turtle (Pelodiscus sinensis)37
336
2409.1111.09.1
Birds (Neognathae)253
1079
22454.3253.01.3
Perching birds (Passeriformes)139
294
282.1222.01.1
Flycatcher (Ficedula albicollis)18
43
242.4111.02.4
Zebra Finch (Taeniopygia guttata)16
87
2255.4111.05.4
Galloanserae80
187
2202.3232.11.1
Duck (Anas platyrhynchos)3
9
253.0111.03.0
Turkeys (Phasianidae)20
131
2406.5222.03.3
Chicken (Gallus gallus)10
102
23910.2111.010.2
Anole Lizard (Anolis carolinensis)30
234
2307.8111.07.8
Mammals (Mammalia)314
14691
299846.824316.51.9
Platypus (Ornithorhynchus anatinus)61
473
2437.8111.07.8
Marsupials and Placental mammals (Theria)398
11119
279827.924219.01.6
Placental mammals (Eutheria)807
13774
258817.123912.11.3
African mammals (Afrotheria)8
42
2225.2232.22.4
Elephant (Loxodonta africana)4
21
2145.2111.05.2
Tenrec (Echinops telfairi)31
113
2153.6111.03.6
Hyrax (Procavia capensis)2
5
232.5111.02.5
Sloth (Choloepus hoffmanni)9
21
232.3111.02.3
Armadillo (Dasypus novemcinctus)20
116
2205.8111.05.8
Boreoeutheria397
2420
21006.12254.91.3
Laurasiatherian mammals (Laurasiatheria)85
287
2523.42112.51.4
Insectivore mammals (Insectivora)1
2
222.0222.01.0
Hedgehog (Erinaceus europaeus)9
19
232.1111.02.1
Shrew (Sorex araneus)14
49
2103.5111.03.5
Horse (Equus caballus)72
543
2597.5111.07.5
Cetaceans and Even-toed ungulates (Cetartiodactyla)20
50
262.5232.11.1
Alpaca (Vicugna pacos)6
16
262.7111.02.7
Pig (Sus scrofa)11
25
242.3111.02.3
Dolphin (Tursiops truncatus)2
6
243.0111.03.0
Bovids (Bovidae)39
116
2123.0222.01.5
Sheep (Ovis aries)10
26
252.6111.02.6
Carnivores (Carnivora)10
21
232.1232.11.0
Cat (Felis catus)1
2
222.0111.02.0
Caniforms (Caniformia)16
38
272.4232.11.1
Ferret (Mustela putorius furo)8
16
222.0111.02.0
Dog (Canis lupus familiaris)9
20
242.2111.02.2
Panda (Ailuropoda melanoleuca)1
2
222.0111.02.0
Bats (Chiroptera)1
4
444.0222.02.0
Megabat (Pteropus vampyrus)6
12
222.0111.02.0
Microbat (Myotis lucifugus)4
12
253.0111.03.0
Primates and Rodents (Euarchontoglires)130
510
2333.92133.61.1
Primates (Primates)101
432
2264.32123.91.1
Dry-nosed primates (Haplorrhini)23
107
2114.72104.51.0
Simians (Simiiformes)209
1775
22868.5294.11.6
Apes and Old World monkeys (Catarrhini)282
1230
2314.4283.51.2
Apes (Hominoidea)176
533
2173.0252.71.1
Great apes (Hominidae)163
418
2102.6242.31.1
Hominines (Homininae)80
242
2353.0232.11.3
Human (Homo sapiens)2
5
232.5111.02.5
Chimpanzee (Pan troglodytes)7
16
232.3111.02.3
Gorilla (Gorilla gorilla gorilla)14
29
232.1111.02.1
Orangutan (Pongo abelii)20
50
2122.5111.02.5
Old World monkeys (Cercopithecinae)35
72
232.1232.01.0
Macaque (Macaca mulatta)27
69
262.6111.02.6
Marmoset (Callithrix jacchus)5
12
242.4111.02.4
Tarsier (Tarsius syrichta)11
33
263.0111.03.0
Wet nose lemurs (Strepsirrhini)1
4
444.0222.02.0
Bushbaby (Otolemur garnettii)2
8
264.0111.04.0
Mouse Lemur (Microcebus murinus)10
24
252.4111.02.4
Tree Shrew (Tupaia belangeri)13
42
263.2111.03.2
Rodents and Rabbits (Glires)7
23
263.3232.31.4
Pika (Ochotona princeps)10
24
242.4111.02.4
Rabbit (Oryctolagus cuniculus)4
27
3146.8111.06.8
Rodents (Rodentia)1
2
222.0222.01.0
Squirrels and Old World rodents (Sciurognathi)7
18
232.6232.61.0
Kangaroo rat (Dipodomys ordii)6
20
293.3111.03.3
Old World rodents (Murinae)109
727
2786.7222.03.3
Mouse (Mus musculus)35
206
2435.9111.05.9
Rat (Rattus norvegicus)23
75
293.3111.03.3
Guinea Pig (Cavia porcellus)2
4
222.0111.02.0
Marsupials (Marsupialia)34
170
2425.0232.12.3
Opossum (Monodelphis domestica)28
249
2518.9111.08.9
Tasmanian devil (Sarcophilus harrisii)9
19
232.1111.02.1
Wallaby (Macropus eugenii)3
7
232.3111.02.3
X.tropicalis (Xenopus tropicalis)59
606
23810.3111.010.3
Coelacanth (Latimeria chalumnae)33
300
2459.1111.09.1
Lamprey (Petromyzon marinus)47
156
2143.3111.03.3