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Statistics on protein trees

The protein tree pipeline is described at the following page.

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Size of the trees (per root node)

Species# Trees% Trees# Genes% GenesMin # genesMax # genesAverage # genesMin # speciesMax # speciesAverage # speciesAverage # genes per species
Animals and Fungi (Opisthokonta)2178
324513
21312149.026962.62.3
S.cerevisiae (Saccharomyces cerevisiae)381
1173
2403.1111.03.1
Bilateral animals (Bilateria)3032
484168
21229159.726860.22.5
Chordates (Chordata)1156
97121
2112984.026645.21.7
Ciona sea squirts (Ciona)1442
3994
2532.8222.01.4
C.savignyi (Ciona savignyi)84
217
262.6111.02.6
C.intestinalis (Ciona intestinalis)153
418
2152.7111.02.7
Vertebrates (Vertebrata)747
73712
2118198.726442.92.0
Lamprey (Petromyzon marinus)46
154
2143.3111.03.3
Bony vertebrates (Euteleostomi)2042
117957
2111357.826332.51.8
Lobe-finned fish (Sarcopterygii)203
6528
236832.225223.31.5
Coelacanth (Latimeria chalumnae)34
304
2458.9111.08.9
Tetrapods (Tetrapoda)140
15660
2922111.925124.34.0
Amniotes (Amniota)562
23704
2117442.225018.41.8
Reptiles and birds (Sauria)42
296
2727.0273.03.0
Anole Lizard (Anolis carolinensis)28
209
2357.5111.07.5
Birds and turtles (Testudines + Archosauria group)63
380
2726.0263.21.9
Birds (Neognathae)338
1235
22453.7252.71.2
Duck (Anas platyrhynchos)3
9
253.0111.03.0
Turkeys (Phasianidae)22
138
2416.3222.03.1
Turkey (Meleagris gallopavo)1
3
333.0111.03.0
Chicken (Gallus gallus)10
101
23910.1111.010.1
Perching birds (Passeriformes)137
289
282.1222.01.1
Flycatcher (Ficedula albicollis)20
46
232.3111.02.3
Zebra Finch (Taeniopygia guttata)14
71
2215.1111.05.1
Chinese softshell turtle (Pelodiscus sinensis)34
236
2336.9111.06.9
Mammals (Mammalia)321
14914
299346.524316.01.9
Marsupials and Placental mammals (Theria)393
10254
233726.124218.91.5
Placental mammals (Eutheria)801
13417
222416.823912.21.3
Boreoeutheria394
2614
21796.62284.91.4
Laurasiatherian mammals (Laurasiatheria)79
226
2122.92112.51.1
Carnivores (Carnivora)8
17
232.1232.11.0
Caniforms (Caniformia)15
36
272.4232.11.1
Ferret (Mustela putorius furo)8
16
222.0111.02.0
Panda (Ailuropoda melanoleuca)1
2
222.0111.02.0
Dog (Canis lupus familiaris)9
20
242.2111.02.2
Cat (Felis catus)2
4
222.0111.02.0
Horse (Equus caballus)75
523
2507.0111.07.0
Bats (Chiroptera)1
4
444.0222.02.0
Microbat (Myotis lucifugus)3
7
232.3111.02.3
Megabat (Pteropus vampyrus)5
10
222.0111.02.0
Cetaceans and Even-toed ungulates (Cetartiodactyla)21
52
262.5232.11.1
Pig (Sus scrofa)12
27
242.2111.02.2
Dolphin (Tursiops truncatus)2
6
243.0111.03.0
Alpaca (Vicugna pacos)6
16
262.7111.02.7
Bovids (Bovidae)38
114
2123.0222.01.5
Sheep (Ovis aries)13
32
252.5111.02.5
Insectivore mammals (Insectivora)1
2
222.0222.01.0
Hedgehog (Erinaceus europaeus)9
19
232.1111.02.1
Shrew (Sorex araneus)12
41
2103.4111.03.4
Primates and Rodents (Euarchontoglires)131
533
2334.12133.61.1
Tree Shrew (Tupaia belangeri)13
41
263.2111.03.2
Rodents and Rabbits (Glires)6
16
252.7232.21.2
Rodents (Rodentia)1
2
222.0222.01.0
Squirrels and Old World rodents (Sciurognathi)8
20
232.5232.51.0
Kangaroo rat (Dipodomys ordii)6
20
293.3111.03.3
Old World rodents (Murinae)110
633
2715.8222.02.9
Rat (Rattus norvegicus)23
75
293.3111.03.3
Mouse (Mus musculus)37
218
2435.9111.05.9
Guinea Pig (Cavia porcellus)3
6
222.0111.02.0
Rabbit (Oryctolagus cuniculus)3
11
263.7111.03.7
Pika (Ochotona princeps)10
24
242.4111.02.4
Primates (Primates)101
684
22786.82124.01.3
Dry-nosed primates (Haplorrhini)23
107
2114.72104.51.0
Tarsier (Tarsius syrichta)11
33
263.0111.03.0
Simians (Simiiformes)207
1531
21897.4294.01.5
Marmoset (Callithrix jacchus)5
12
242.4111.02.4
Apes and Old World monkeys (Catarrhini)285
1214
2254.3283.51.2
Old World monkeys (Cercopithecinae)35
72
232.1232.01.0
Macaque (Macaca mulatta)28
77
272.8111.02.8
Apes (Hominoidea)176
532
2173.0252.71.1
Great apes (Hominidae)161
413
2102.6242.31.1
Hominines (Homininae)78
237
2353.0232.11.3
Chimpanzee (Pan troglodytes)7
16
232.3111.02.3
Gorilla (Gorilla gorilla gorilla)15
31
232.1111.02.1
Human (Homo sapiens)2
5
232.5111.02.5
Orangutan (Pongo abelii)20
51
2122.5111.02.5
Wet nose lemurs (Strepsirrhini)1
4
444.0222.02.0
Mouse Lemur (Microcebus murinus)11
26
252.4111.02.4
Bushbaby (Otolemur garnettii)1
6
666.0111.06.0
Sloth (Choloepus hoffmanni)10
23
232.3111.02.3
Armadillo (Dasypus novemcinctus)19
127
2206.7111.06.7
African mammals (Afrotheria)6
18
273.0232.31.2
Hyrax (Procavia capensis)2
5
232.5111.02.5
Elephant (Loxodonta africana)2
16
2148.0111.08.0
Tenrec (Echinops telfairi)33
124
2153.8111.03.8
Marsupials (Marsupialia)31
115
2183.7232.11.8
Tasmanian devil (Sarcophilus harrisii)11
32
282.9111.02.9
Opossum (Monodelphis domestica)33
271
2488.2111.08.2
Wallaby (Macropus eugenii)3
7
232.3111.02.3
Platypus (Ornithorhynchus anatinus)59
447
2437.6111.07.6
X.tropicalis (Xenopus tropicalis)59
711
23812.1111.012.1
Ray-finned fishes (Neopterygii)284
3276
233411.52115.61.8
Teleost fishes (Clupeocephala)310
2517
21998.12104.71.6
Teleost fishes (Acanthomorphata)322
1143
2473.5282.81.2
Cod (Gadus morhua)7
43
2236.1111.06.1
Teleost fishes (Percomorphaceae)165
815
2784.9273.11.4
Teleost fishes (Percomorpharia)6
13
232.2232.21.0
Puffers (Tetraodontidae)7
15
232.1222.01.1
Fugu (Takifugu rubripes)1
2
222.0111.02.0
Tetraodon (Tetraodon nigroviridis)22
60
272.7111.02.7
Stickleback (Gasterosteus aculeatus)18
73
2154.1111.04.1
Teleost fishes (Ovalentaria)44
392
2718.9242.73.2
Tilapia (Oreochromis niloticus)14
79
2295.6111.05.6
Silverside fishes (Atherinomorphae)45
133
2223.0232.11.4
Live-bearing aquarium fishes (Poeciliinae)24
69
2132.9222.01.4
Platyfish (Xiphophorus maculatus)1
2
222.0111.02.0
Amazon molly (Poecilia formosa)9
32
293.6111.03.6
Medaka (Oryzias latipes)79
336
2234.3111.04.3
Teleost fishes (Otophysa)63
168
2142.7222.01.3
Zebrafish (Danio rerio)87
574
2446.6111.06.6
Cave fish (Astyanax mexicanus)18
41
232.3111.02.3
Spotted gar (Lepisosteus oculatus)17
46
252.7111.02.7
Arthropods and nematodes (Ecdysozoa)89
378
2334.2222.02.1
Fruitfly (Drosophila melanogaster)491
1890
2443.8111.03.8
C.elegans (Caenorhabditis elegans)1269
6867
2515.4111.05.4