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Statistics on protein trees

The protein tree pipeline is described at the following page.

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Size of the trees (per root node)

Species# Trees% Trees# Genes% GenesMin # genesMax # genesAverage # genesMin # speciesMax # speciesAverage # speciesAverage # genes per species
Animals and Fungi (Opisthokonta)2177
325042
21178149.326962.72.3
S.cerevisiae (Saccharomyces cerevisiae)382
1158
2343.0111.03.0
Bilateral animals (Bilateria)3037
483224
21288159.126860.22.5
Chordates (Chordata)1160
99141
2106585.526645.41.7
Vertebrates (Vertebrata)735
72828
2118599.126443.62.0
Lamprey (Petromyzon marinus)47
157
2143.3111.03.3
Bony vertebrates (Euteleostomi)2003
116413
299358.126332.71.7
Ray-finned fishes (Neopterygii)287
3321
233511.62115.61.8
Teleost fishes (Clupeocephala)315
2478
21447.92104.71.6
Teleost fishes (Otophysa)64
174
2142.7222.01.4
Cave fish (Astyanax mexicanus)19
45
242.4111.02.4
Zebrafish (Danio rerio)85
521
2436.1111.06.1
Teleost fishes (Acanthomorphata)318
1086
2473.4282.81.2
Teleost fishes (Percomorphaceae)162
813
2805.0273.11.4
Teleost fishes (Eupercaria)6
13
232.2232.21.0
Puffers (Tetraodontidae)6
13
232.2222.01.1
Fugu (Takifugu rubripes)1
2
222.0111.02.0
Tetraodon (Tetraodon nigroviridis)22
60
272.7111.02.7
Stickleback (Gasterosteus aculeatus)18
69
2153.8111.03.8
Teleost fishes (Ovalentaria)39
334
2718.6242.63.1
Tilapia (Oreochromis niloticus)14
80
2315.7111.05.7
Silverside fishes (Atherinomorphae)44
130
2223.0232.11.4
Medaka (Oryzias latipes)77
323
2234.2111.04.2
Live-bearing aquarium fishes (Poeciliinae)24
76
2133.2222.01.6
Platyfish (Xiphophorus maculatus)1
2
222.0111.02.0
Amazon molly (Poecilia formosa)10
34
293.4111.03.4
Cod (Gadus morhua)13
68
2305.2111.05.2
Spotted gar (Lepisosteus oculatus)14
39
262.8111.02.8
Lobe-finned fish (Sarcopterygii)207
6588
236831.825222.81.7
Tetrapods (Tetrapoda)131
15241
2982116.325125.83.7
Amniotes (Amniota)588
23957
2142440.724917.61.7
Mammals (Mammalia)325
15272
2100547.024316.21.9
Platypus (Ornithorhynchus anatinus)61
478
2437.8111.07.8
Marsupials and Placental mammals (Theria)393
11418
262029.124219.21.5
Marsupials (Marsupialia)34
129
2243.8232.11.8
Tasmanian devil (Sarcophilus harrisii)8
18
232.2111.02.2
Opossum (Monodelphis domestica)34
261
2537.7111.07.7
Wallaby (Macropus eugenii)3
7
232.3111.02.3
Placental mammals (Eutheria)796
13216
222416.623912.21.2
African mammals (Afrotheria)8
26
273.2232.21.4
Tenrec (Echinops telfairi)29
105
2153.6111.03.6
Elephant (Loxodonta africana)3
18
2146.0111.06.0
Hyrax (Procavia capensis)2
5
232.5111.02.5
Placental mammals (Boreoeutheria)398
2335
2615.92284.91.2
Laurasiatherian mammals (Laurasiatheria)80
222
2112.82112.51.1
Horse (Equus caballus)81
684
2478.4111.08.4
Bats (Chiroptera)1
4
444.0222.02.0
Megabat (Pteropus vampyrus)6
12
222.0111.02.0
Microbat (Myotis lucifugus)4
9
232.2111.02.2
Carnivores (Carnivora)8
17
232.1232.11.0
Cat (Felis catus)1
2
222.0111.02.0
Caniforms (Caniformia)15
36
272.4232.11.1
Panda (Ailuropoda melanoleuca)1
2
222.0111.02.0
Ferret (Mustela putorius furo)8
16
222.0111.02.0
Dog (Canis lupus familiaris)10
22
242.2111.02.2
Cetaceans and Even-toed ungulates (Cetartiodactyla)20
50
262.5232.11.1
Bovids (Bovidae)39
116
2123.0222.01.5
Sheep (Ovis aries)10
26
252.6111.02.6
Dolphin (Tursiops truncatus)2
6
243.0111.03.0
Pig (Sus scrofa)11
25
242.3111.02.3
Alpaca (Vicugna pacos)6
16
262.7111.02.7
Hedgehog (Erinaceus europaeus)11
27
252.5111.02.5
Shrew (Sorex araneus)12
41
2103.4111.03.4
Primates and Rodents (Euarchontoglires)130
512
2333.92133.61.1
Rodents and Rabbits (Glires)6
14
232.3232.31.0
Rabbit (Oryctolagus cuniculus)7
67
3349.6111.09.6
Pika (Ochotona princeps)10
24
242.4111.02.4
Rodents (Rodentia)1
2
222.0222.01.0
Guinea Pig (Cavia porcellus)2
4
222.0111.02.0
Squirrels and Old World rodents (Sciurognathi)6
16
232.7232.71.0
Kangaroo rat (Dipodomys ordii)5
17
293.4111.03.4
Old World rodents (Murinae)107
648
2786.1222.03.0
Mouse (Mus musculus)35
206
2435.9111.05.9
Rat (Rattus norvegicus)23
77
293.3111.03.3
Tree Shrew (Tupaia belangeri)13
42
263.2111.03.2
Primates (Primates)101
659
22626.52123.91.3
Wet nose lemurs (Strepsirrhini)1
4
444.0222.02.0
Bushbaby (Otolemur garnettii)2
8
264.0111.04.0
Mouse Lemur (Microcebus murinus)10
24
252.4111.02.4
Dry-nosed primates (Haplorrhini)22
104
2114.72104.61.0
Tarsier (Tarsius syrichta)11
36
283.3111.03.3
Simians (Simiiformes)205
1470
21947.2294.01.5
Apes and Old World monkeys (Catarrhini)285
1298
2474.6283.51.4
Apes (Hominoidea)175
526
2173.0252.71.1
Great apes (Hominidae)163
413
2102.5242.31.1
Hominines (Homininae)77
228
2353.0232.11.3
Chimpanzee (Pan troglodytes)7
16
232.3111.02.3
Gorilla (Gorilla gorilla gorilla)14
29
232.1111.02.1
Human (Homo sapiens)2
5
232.5111.02.5
Orangutan (Pongo abelii)18
46
2122.6111.02.6
Old World monkeys (Cercopithecinae)35
72
232.1232.01.0
Macaque (Macaca mulatta)25
64
282.6111.02.6
Marmoset (Callithrix jacchus)6
15
242.5111.02.5
Sloth (Choloepus hoffmanni)10
23
232.3111.02.3
Armadillo (Dasypus novemcinctus)21
115
2215.5111.05.5
Reptiles and birds (Sauria)40
277
2586.9273.02.9
Birds and turtles (Archelosauria)64
577
23169.0263.22.1
Chinese softshell turtle (Pelodiscus sinensis)36
354
2479.8111.09.8
Birds (Neognathae)248
791
2173.2253.01.1
Perching birds (Passeriformes)140
321
2282.3222.01.1
Flycatcher (Ficedula albicollis)16
38
232.4111.02.4
Zebra Finch (Taeniopygia guttata)12
47
2153.9111.03.9
Fowls (Galloanserae)81
189
2202.3232.11.1
Duck (Anas platyrhynchos)3
9
253.0111.03.0
Turkeys (Phasianidae)21
133
2406.3222.03.2
Chicken (Gallus gallus)10
102
23910.2111.010.2
Turkey (Meleagris gallopavo)1
3
333.0111.03.0
Anole Lizard (Anolis carolinensis)29
197
2356.8111.06.8
X.tropicalis (Xenopus tropicalis)61
612
23810.0111.010.0
Coelacanth (Latimeria chalumnae)35
285
2288.1111.08.1
Ciona sea squirts (Ciona)1447
4011
2532.8222.01.4
C.intestinalis (Ciona intestinalis)154
418
2122.7111.02.7
C.savignyi (Ciona savignyi)84
217
262.6111.02.6
Arthropods and nematodes (Ecdysozoa)87
386
2334.4222.02.2
Fruitfly (Drosophila melanogaster)492
1931
2443.9111.03.9
C.elegans (Caenorhabditis elegans)1257
6810
2555.4111.05.4