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Statistics on protein trees

The protein tree pipeline is described at the following page.

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Size of the trees (per root node)

Species# Trees% Trees# Genes% GenesMin # genesMax # genesAverage # genesMin # speciesMax # speciesAverage # speciesAverage # genes per species
Animals and Fungi (Opisthokonta)2191
324939
21281148.326962.42.3
Bilateral animals (Bilateria)3034
478383
21293157.726860.12.5
Chordates (Chordata)1154
101103
2112587.626645.41.7
Vertebrates (Vertebrata)757
74766
2118498.826442.72.0
Bony vertebrates (Euteleostomi)2003
113652
2105356.726332.91.7
Ray-finned fishes (Neopterygii)275
2977
231210.82115.71.7
Spotted gar (Lepisosteus oculatus)14
39
262.8111.02.8
Teleost fishes (Clupeocephala)323
2554
21567.92104.71.7
Teleost fishes (Acanthomorphata)320
1207
2943.8282.81.3
Cod (Gadus morhua)6
19
273.2111.03.2
Teleost fishes (Percomorphaceae)165
823
2805.0273.11.4
Teleost fishes (Ovalentaria)40
365
2719.1242.73.3
Silverside fishes (Atherinomorphae)42
123
2222.9232.11.4
Live-bearing aquarium fishes (Poeciliinae)24
64
2132.7222.01.3
Platyfish (Xiphophorus maculatus)1
2
222.0111.02.0
Amazon molly (Poecilia formosa)10
34
293.4111.03.4
Medaka (Oryzias latipes)79
320
2234.1111.04.1
Tilapia (Oreochromis niloticus)12
43
2173.6111.03.6
Teleost fishes (Eupercaria)6
13
232.2232.21.0
Stickleback (Gasterosteus aculeatus)17
58
2153.4111.03.4
Puffers (Tetraodontidae)7
34
2214.9222.02.4
Tetraodon (Tetraodon nigroviridis)21
58
272.8111.02.8
Fugu (Takifugu rubripes)1
2
222.0111.02.0
Teleost fishes (Otophysa)65
171
2132.6222.01.3
Cave fish (Astyanax mexicanus)21
50
232.4111.02.4
Zebrafish (Danio rerio)106
577
2415.4111.05.4
Lobe-finned fish (Sarcopterygii)215
7108
275733.125222.11.8
Tetrapods (Tetrapoda)142
15163
2869106.825124.23.6
X.tropicalis (Xenopus tropicalis)58
695
23912.0111.012.0
Amniotes (Amniota)593
24309
2109041.024917.81.7
Reptiles and birds (Sauria)39
317
2708.1273.13.4
Anole Lizard (Anolis carolinensis)26
228
2368.8111.08.8
Birds and turtles (Archelosauria)63
635
231610.1263.22.6
Chinese softshell turtle (Pelodiscus sinensis)39
296
2497.6111.07.6
Birds (Neognathae)254
845
2453.3252.91.1
Perching birds (Passeriformes)138
291
282.1222.01.1
Zebra Finch (Taeniopygia guttata)12
70
2165.8111.05.8
Flycatcher (Ficedula albicollis)20
47
232.4111.02.4
Fowls (Galloanserae)81
189
2202.3232.11.1
Duck (Anas platyrhynchos)3
9
253.0111.03.0
Turkeys (Phasianidae)22
153
2407.0222.03.5
Chicken (Gallus gallus)10
104
23910.4111.010.4
Turkey (Meleagris gallopavo)1
3
333.0111.03.0
Mammals (Mammalia)350
14570
289841.624315.12.0
Marsupials and Placental mammals (Theria)407
11015
233027.124219.21.5
Marsupials (Marsupialia)39
233
2386.0232.22.6
Tasmanian devil (Sarcophilus harrisii)10
23
232.3111.02.3
Opossum (Monodelphis domestica)29
251
2478.7111.08.7
Wallaby (Macropus eugenii)3
7
232.3111.02.3
Placental mammals (Eutheria)858
14053
222616.423911.91.3
Sloth (Choloepus hoffmanni)9
21
232.3111.02.3
Armadillo (Dasypus novemcinctus)15
86
2205.7111.05.7
Placental mammals (Boreoeutheria)450
2708
21196.02284.71.4
Laurasiatherian mammals (Laurasiatheria)86
271
2343.22112.51.2
Horse (Equus caballus)79
669
2428.5111.08.5
Carnivores (Carnivora)12
27
242.2232.21.0
Caniforms (Caniformia)16
39
272.4232.11.1
Panda (Ailuropoda melanoleuca)1
2
222.0111.02.0
Dog (Canis lupus familiaris)8
18
242.2111.02.2
Ferret (Mustela putorius furo)8
16
222.0111.02.0
Cat (Felis catus)2
4
222.0111.02.0
Cetaceans and Even-toed ungulates (Cetartiodactyla)21
55
262.6232.11.2
Bovids (Bovidae)44
131
2123.0222.01.5
Sheep (Ovis aries)13
33
252.5111.02.5
Pig (Sus scrofa)13
29
242.2111.02.2
Dolphin (Tursiops truncatus)2
6
243.0111.03.0
Alpaca (Vicugna pacos)6
16
262.7111.02.7
Bats (Chiroptera)1
4
444.0222.02.0
Microbat (Myotis lucifugus)3
7
232.3111.02.3
Megabat (Pteropus vampyrus)6
12
222.0111.02.0
Insectivore mammals (Insectivora)1
2
222.0222.01.0
Hedgehog (Erinaceus europaeus)8
19
252.4111.02.4
Shrew (Sorex araneus)14
47
2103.4111.03.4
Primates and Rodents (Euarchontoglires)150
607
2254.02153.51.1
Tree Shrew (Tupaia belangeri)12
40
263.3111.03.3
Primates (Primates)98
413
2244.22123.91.1
Wet nose lemurs (Strepsirrhini)1
4
444.0222.02.0
Bushbaby (Otolemur garnettii)2
8
264.0111.04.0
Mouse Lemur (Microcebus murinus)10
24
252.4111.02.4
Dry-nosed primates (Haplorrhini)24
133
2285.52104.71.1
Tarsier (Tarsius syrichta)9
26
262.9111.02.9
Simians (Simiiformes)208
1812
23038.7294.01.7
Apes and Old World monkeys (Catarrhini)289
1206
2224.2283.51.2
Old World monkeys (Cercopithecinae)33
67
232.0222.01.0
Macaque (Macaca mulatta)27
69
242.6111.02.6
Apes (Hominoidea)178
529
2173.0252.71.1
Great apes (Hominidae)162
408
292.5242.31.1
Orangutan (Pongo abelii)19
49
2122.6111.02.6
Hominines (Homininae)83
237
2342.9232.11.3
Chimpanzee (Pan troglodytes)7
16
232.3111.02.3
Gorilla (Gorilla gorilla gorilla)14
29
232.1111.02.1
Human (Homo sapiens)1
2
222.0111.02.0
Marmoset (Callithrix jacchus)6
15
242.5111.02.5
Rodents and Rabbits (Glires)9
29
273.2232.31.4
Rodents (Rodentia)8
33
274.1242.91.4
Guinea Pig (Cavia porcellus)1
2
222.0111.02.0
Squirrels and Old World rodents (Sciurognathi)15
97
2346.5232.32.5
Kangaroo rat (Dipodomys ordii)5
17
293.4111.03.4
Old World rodents (Murinae)243
902
2303.7222.01.9
Mouse (Mus musculus)114
447
2153.9111.03.9
Rat (Rattus norvegicus)30
91
283.0111.03.0
Pika (Ochotona princeps)10
24
242.4111.02.4
Rabbit (Oryctolagus cuniculus)6
29
2144.8111.04.8
African mammals (Afrotheria)6
18
273.0232.31.2
Elephant (Loxodonta africana)3
18
2146.0111.06.0
Tenrec (Echinops telfairi)30
107
2153.6111.03.6
Hyrax (Procavia capensis)2
5
232.5111.02.5
Platypus (Ornithorhynchus anatinus)52
339
2326.5111.06.5
Coelacanth (Latimeria chalumnae)34
277
2288.1111.08.1
Lamprey (Petromyzon marinus)48
185
2283.9111.03.9
Ciona sea squirts (Ciona)1440
3996
2532.8222.01.4
C.savignyi (Ciona savignyi)85
220
262.6111.02.6
C.intestinalis (Ciona intestinalis)155
425
2152.7111.02.7
Arthropods and nematodes (Ecdysozoa)91
383
2334.2222.02.1
Fruitfly (Drosophila melanogaster)489
1920
2443.9111.03.9
C.elegans (Caenorhabditis elegans)1257
6898
2515.5111.05.5
S.cerevisiae (Saccharomyces cerevisiae)380
1161
2343.1111.03.1