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Statistics on protein trees

The protein tree pipeline is described at the following page.

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Size of the trees (per root node)

Species# Trees% Trees# Genes% GenesMin # genesMax # genesAverage # genesMin # speciesMax # speciesAverage # speciesAverage # genes per species
Animals and Fungi (Opisthokonta)2177
325042
21178149.326962.72.3
S.cerevisiae (Saccharomyces cerevisiae)382
1158
2343.0111.03.0
Bilateral animals (Bilateria)3037
483224
21288159.126860.22.5
Arthropods and nematodes (Ecdysozoa)87
386
2334.4222.02.2
C.elegans (Caenorhabditis elegans)1257
6810
2555.4111.05.4
Fruitfly (Drosophila melanogaster)492
1931
2443.9111.03.9
Chordates (Chordata)1160
99141
2106585.526645.41.7
Ciona sea squirts (Ciona)1447
4011
2532.8222.01.4
C.savignyi (Ciona savignyi)84
217
262.6111.02.6
C.intestinalis (Ciona intestinalis)154
418
2122.7111.02.7
Vertebrates (Vertebrata)735
72828
2118599.126443.62.0
Lamprey (Petromyzon marinus)47
157
2143.3111.03.3
Bony vertebrates (Euteleostomi)2003
116413
299358.126332.71.7
Ray-finned fishes (Neopterygii)287
3321
233511.62115.61.8
Teleost fishes (Clupeocephala)315
2478
21447.92104.71.6
Teleost fishes (Otophysa)64
174
2142.7222.01.4
Cave fish (Astyanax mexicanus)19
45
242.4111.02.4
Zebrafish (Danio rerio)85
521
2436.1111.06.1
Teleost fishes (Acanthomorphata)318
1086
2473.4282.81.2
Cod (Gadus morhua)13
68
2305.2111.05.2
Teleost fishes (Percomorphaceae)162
813
2805.0273.11.4
Teleost fishes (Ovalentaria)39
334
2718.6242.63.1
Silverside fishes (Atherinomorphae)44
130
2223.0232.11.4
Medaka (Oryzias latipes)77
323
2234.2111.04.2
Live-bearing aquarium fishes (Poeciliinae)24
76
2133.2222.01.6
Amazon molly (Poecilia formosa)10
34
293.4111.03.4
Platyfish (Xiphophorus maculatus)1
2
222.0111.02.0
Tilapia (Oreochromis niloticus)14
80
2315.7111.05.7
Teleost fishes (Eupercaria)6
13
232.2232.21.0
Stickleback (Gasterosteus aculeatus)18
69
2153.8111.03.8
Puffers (Tetraodontidae)6
13
232.2222.01.1
Tetraodon (Tetraodon nigroviridis)22
60
272.7111.02.7
Fugu (Takifugu rubripes)1
2
222.0111.02.0
Spotted gar (Lepisosteus oculatus)14
39
262.8111.02.8
Lobe-finned fish (Sarcopterygii)207
6588
236831.825222.81.7
Coelacanth (Latimeria chalumnae)35
285
2288.1111.08.1
Tetrapods (Tetrapoda)131
15241
2982116.325125.83.7
Amniotes (Amniota)588
23957
2142440.724917.61.7
Reptiles and birds (Sauria)40
277
2586.9273.02.9
Anole Lizard (Anolis carolinensis)29
197
2356.8111.06.8
Birds and turtles (Archelosauria)64
577
23169.0263.22.1
Birds (Neognathae)248
791
2173.2253.01.1
Perching birds (Passeriformes)140
321
2282.3222.01.1
Flycatcher (Ficedula albicollis)16
38
232.4111.02.4
Zebra Finch (Taeniopygia guttata)12
47
2153.9111.03.9
Fowls (Galloanserae)81
189
2202.3232.11.1
Duck (Anas platyrhynchos)3
9
253.0111.03.0
Turkeys (Phasianidae)21
133
2406.3222.03.2
Turkey (Meleagris gallopavo)1
3
333.0111.03.0
Chicken (Gallus gallus)10
102
23910.2111.010.2
Chinese softshell turtle (Pelodiscus sinensis)36
354
2479.8111.09.8
Mammals (Mammalia)325
15272
2100547.024316.21.9
Platypus (Ornithorhynchus anatinus)61
478
2437.8111.07.8
Marsupials and Placental mammals (Theria)393
11418
262029.124219.21.5
Marsupials (Marsupialia)34
129
2243.8232.11.8
Opossum (Monodelphis domestica)34
261
2537.7111.07.7
Wallaby (Macropus eugenii)3
7
232.3111.02.3
Tasmanian devil (Sarcophilus harrisii)8
18
232.2111.02.2
Placental mammals (Eutheria)796
13216
222416.623912.21.2
Placental mammals (Boreoeutheria)398
2335
2615.92284.91.2
Laurasiatherian mammals (Laurasiatheria)80
222
2112.82112.51.1
Cetaceans and Even-toed ungulates (Cetartiodactyla)20
50
262.5232.11.1
Alpaca (Vicugna pacos)6
16
262.7111.02.7
Dolphin (Tursiops truncatus)2
6
243.0111.03.0
Bovids (Bovidae)39
116
2123.0222.01.5
Sheep (Ovis aries)10
26
252.6111.02.6
Pig (Sus scrofa)11
25
242.3111.02.3
Hedgehog (Erinaceus europaeus)11
27
252.5111.02.5
Shrew (Sorex araneus)12
41
2103.4111.03.4
Bats (Chiroptera)1
4
444.0222.02.0
Megabat (Pteropus vampyrus)6
12
222.0111.02.0
Microbat (Myotis lucifugus)4
9
232.2111.02.2
Carnivores (Carnivora)8
17
232.1232.11.0
Cat (Felis catus)1
2
222.0111.02.0
Caniforms (Caniformia)15
36
272.4232.11.1
Ferret (Mustela putorius furo)8
16
222.0111.02.0
Panda (Ailuropoda melanoleuca)1
2
222.0111.02.0
Dog (Canis lupus familiaris)10
22
242.2111.02.2
Horse (Equus caballus)81
684
2478.4111.08.4
Primates and Rodents (Euarchontoglires)130
512
2333.92133.61.1
Primates (Primates)101
659
22626.52123.91.3
Dry-nosed primates (Haplorrhini)22
104
2114.72104.61.0
Tarsier (Tarsius syrichta)11
36
283.3111.03.3
Simians (Simiiformes)205
1470
21947.2294.01.5
Marmoset (Callithrix jacchus)6
15
242.5111.02.5
Apes and Old World monkeys (Catarrhini)285
1298
2474.6283.51.4
Apes (Hominoidea)175
526
2173.0252.71.1
Great apes (Hominidae)163
413
2102.5242.31.1
Hominines (Homininae)77
228
2353.0232.11.3
Human (Homo sapiens)2
5
232.5111.02.5
Chimpanzee (Pan troglodytes)7
16
232.3111.02.3
Gorilla (Gorilla gorilla gorilla)14
29
232.1111.02.1
Orangutan (Pongo abelii)18
46
2122.6111.02.6
Old World monkeys (Cercopithecinae)35
72
232.1232.01.0
Macaque (Macaca mulatta)25
64
282.6111.02.6
Wet nose lemurs (Strepsirrhini)1
4
444.0222.02.0
Mouse Lemur (Microcebus murinus)10
24
252.4111.02.4
Bushbaby (Otolemur garnettii)2
8
264.0111.04.0
Tree Shrew (Tupaia belangeri)13
42
263.2111.03.2
Rodents and Rabbits (Glires)6
14
232.3232.31.0
Rodents (Rodentia)1
2
222.0222.01.0
Guinea Pig (Cavia porcellus)2
4
222.0111.02.0
Squirrels and Old World rodents (Sciurognathi)6
16
232.7232.71.0
Kangaroo rat (Dipodomys ordii)5
17
293.4111.03.4
Old World rodents (Murinae)107
648
2786.1222.03.0
Mouse (Mus musculus)35
206
2435.9111.05.9
Rat (Rattus norvegicus)23
77
293.3111.03.3
Pika (Ochotona princeps)10
24
242.4111.02.4
Rabbit (Oryctolagus cuniculus)7
67
3349.6111.09.6
African mammals (Afrotheria)8
26
273.2232.21.4
Hyrax (Procavia capensis)2
5
232.5111.02.5
Tenrec (Echinops telfairi)29
105
2153.6111.03.6
Elephant (Loxodonta africana)3
18
2146.0111.06.0
Sloth (Choloepus hoffmanni)10
23
232.3111.02.3
Armadillo (Dasypus novemcinctus)21
115
2215.5111.05.5
X.tropicalis (Xenopus tropicalis)61
612
23810.0111.010.0