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Statistics on protein trees

The protein tree pipeline is described at the following page.

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Size of the trees (per root node)

Species# Trees% Trees# Genes% GenesMin # genesMax # genesAverage # genesMin # speciesMax # speciesAverage # speciesAverage # genes per species
Animals and Fungi (Opisthokonta)2181
324005
21410148.626962.52.3
Bilateral animals (Bilateria)3057
487089
21288159.326860.02.5
Chordates (Chordata)1151
95771
2112583.226645.31.7
Vertebrates (Vertebrata)733
74959
21174102.326443.52.0
Lamprey (Petromyzon marinus)47
156
2143.3111.03.3
Bony vertebrates (Euteleostomi)2021
114869
299556.826332.71.7
Lobe-finned fish (Sarcopterygii)213
6691
236831.425222.51.7
Tetrapods (Tetrapoda)136
14446
2974106.225124.23.5
Amniotes (Amniota)571
24930
2117443.724918.31.8
Reptiles and birds (Sauria)41
278
2676.8273.02.8
Birds and turtles (Testudines + Archosauria group)66
325
2724.9263.21.4
Chinese softshell turtle (Pelodiscus sinensis)37
336
2409.1111.09.1
Birds (Neognathae)253
1079
22454.3253.01.3
Perching birds (Passeriformes)139
294
282.1222.01.1
Flycatcher (Ficedula albicollis)18
43
242.4111.02.4
Zebra Finch (Taeniopygia guttata)16
87
2255.4111.05.4
Galloanserae80
187
2202.3232.11.1
Duck (Anas platyrhynchos)3
9
253.0111.03.0
Turkeys (Phasianidae)20
131
2406.5222.03.3
Chicken (Gallus gallus)10
102
23910.2111.010.2
Anole Lizard (Anolis carolinensis)30
234
2307.8111.07.8
Mammals (Mammalia)314
14691
299846.824316.51.9
Platypus (Ornithorhynchus anatinus)61
473
2437.8111.07.8
Marsupials and Placental mammals (Theria)398
11119
279827.924219.01.6
Placental mammals (Eutheria)807
13774
258817.123912.11.3
Sloth (Choloepus hoffmanni)9
21
232.3111.02.3
Armadillo (Dasypus novemcinctus)20
116
2205.8111.05.8
African mammals (Afrotheria)8
42
2225.2232.22.4
Elephant (Loxodonta africana)4
21
2145.2111.05.2
Tenrec (Echinops telfairi)31
113
2153.6111.03.6
Hyrax (Procavia capensis)2
5
232.5111.02.5
Boreoeutheria397
2420
21006.12254.91.3
Primates and Rodents (Euarchontoglires)130
510
2333.92133.61.1
Tree Shrew (Tupaia belangeri)13
42
263.2111.03.2
Rodents and Rabbits (Glires)7
23
263.3232.31.4
Pika (Ochotona princeps)10
24
242.4111.02.4
Rabbit (Oryctolagus cuniculus)4
27
3146.8111.06.8
Rodents (Rodentia)1
2
222.0222.01.0
Guinea Pig (Cavia porcellus)2
4
222.0111.02.0
Squirrels and Old World rodents (Sciurognathi)7
18
232.6232.61.0
Kangaroo rat (Dipodomys ordii)6
20
293.3111.03.3
Old World rodents (Murinae)109
727
2786.7222.03.3
Rat (Rattus norvegicus)23
75
293.3111.03.3
Mouse (Mus musculus)35
206
2435.9111.05.9
Primates (Primates)101
432
2264.32123.91.1
Dry-nosed primates (Haplorrhini)23
107
2114.72104.51.0
Simians (Simiiformes)209
1775
22868.5294.11.6
Marmoset (Callithrix jacchus)5
12
242.4111.02.4
Apes and Old World monkeys (Catarrhini)282
1230
2314.4283.51.2
Old World monkeys (Cercopithecinae)35
72
232.1232.01.0
Macaque (Macaca mulatta)27
69
262.6111.02.6
Apes (Hominoidea)176
533
2173.0252.71.1
Great apes (Hominidae)163
418
2102.6242.31.1
Hominines (Homininae)80
242
2353.0232.11.3
Gorilla (Gorilla gorilla gorilla)14
29
232.1111.02.1
Human (Homo sapiens)2
5
232.5111.02.5
Chimpanzee (Pan troglodytes)7
16
232.3111.02.3
Orangutan (Pongo abelii)20
50
2122.5111.02.5
Tarsier (Tarsius syrichta)11
33
263.0111.03.0
Wet nose lemurs (Strepsirrhini)1
4
444.0222.02.0
Bushbaby (Otolemur garnettii)2
8
264.0111.04.0
Mouse Lemur (Microcebus murinus)10
24
252.4111.02.4
Laurasiatherian mammals (Laurasiatheria)85
287
2523.42112.51.4
Horse (Equus caballus)72
543
2597.5111.07.5
Cetaceans and Even-toed ungulates (Cetartiodactyla)20
50
262.5232.11.1
Dolphin (Tursiops truncatus)2
6
243.0111.03.0
Alpaca (Vicugna pacos)6
16
262.7111.02.7
Pig (Sus scrofa)11
25
242.3111.02.3
Bovids (Bovidae)39
116
2123.0222.01.5
Sheep (Ovis aries)10
26
252.6111.02.6
Insectivore mammals (Insectivora)1
2
222.0222.01.0
Hedgehog (Erinaceus europaeus)9
19
232.1111.02.1
Shrew (Sorex araneus)14
49
2103.5111.03.5
Carnivores (Carnivora)10
21
232.1232.11.0
Cat (Felis catus)1
2
222.0111.02.0
Caniforms (Caniformia)16
38
272.4232.11.1
Dog (Canis lupus familiaris)9
20
242.2111.02.2
Panda (Ailuropoda melanoleuca)1
2
222.0111.02.0
Ferret (Mustela putorius furo)8
16
222.0111.02.0
Bats (Chiroptera)1
4
444.0222.02.0
Microbat (Myotis lucifugus)4
12
253.0111.03.0
Megabat (Pteropus vampyrus)6
12
222.0111.02.0
Marsupials (Marsupialia)34
170
2425.0232.12.3
Wallaby (Macropus eugenii)3
7
232.3111.02.3
Tasmanian devil (Sarcophilus harrisii)9
19
232.1111.02.1
Opossum (Monodelphis domestica)28
249
2518.9111.08.9
X.tropicalis (Xenopus tropicalis)59
606
23810.3111.010.3
Coelacanth (Latimeria chalumnae)33
300
2459.1111.09.1
Ray-finned fishes (Neopterygii)283
3016
233510.72115.51.7
Teleost fishes (Clupeocephala)321
2489
21437.82104.71.6
Teleost fishes (Otophysa)65
168
2142.6222.01.3
Cave fish (Astyanax mexicanus)22
50
242.3111.02.3
Zebrafish (Danio rerio)91
571
2436.3111.06.3
Teleost fishes (Acanthomorphata)319
1185
2583.7282.81.3
Teleost fishes (Percomorphaceae)161
809
2805.0273.11.4
Teleost fishes (Ovalentaria)40
327
2718.2242.63.0
Tilapia (Oreochromis niloticus)14
81
2315.8111.05.8
Silverside fishes (Atherinomorphae)42
125
2223.0232.11.5
Medaka (Oryzias latipes)77
323
2234.2111.04.2
Live-bearing aquarium fishes (Poeciliinae)23
67
2132.9222.01.5
Amazon molly (Poecilia formosa)10
34
293.4111.03.4
Platyfish (Xiphophorus maculatus)1
2
222.0111.02.0
Teleost fishes (Eupercaria)6
13
232.2232.21.0
Stickleback (Gasterosteus aculeatus)18
69
2153.8111.03.8
Puffers (Tetraodontidae)6
13
232.2222.01.1
Tetraodon (Tetraodon nigroviridis)22
60
272.7111.02.7
Fugu (Takifugu rubripes)1
2
222.0111.02.0
Cod (Gadus morhua)8
49
2206.1111.06.1
Spotted gar (Lepisosteus oculatus)17
46
262.7111.02.7
Ciona sea squirts (Ciona)1436
3974
2532.8222.01.4
C.intestinalis (Ciona intestinalis)154
418
2152.7111.02.7
C.savignyi (Ciona savignyi)86
223
262.6111.02.6
Arthropods and nematodes (Ecdysozoa)89
379
2334.3222.02.1
C.elegans (Caenorhabditis elegans)1262
6876
2515.4111.05.4
Fruitfly (Drosophila melanogaster)497
1923
2443.9111.03.9
S.cerevisiae (Saccharomyces cerevisiae)385
1205
2343.1111.03.1