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Phylogenetic summary of ncRNA families

This page provides a summary of the Ensembl phylogenetic analysis of ncRNA families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Species-specific duplications Single-copy genes Multi-copy genes
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Fruitfly (Drosophila melanogaster)
-------
Caenorhabditis elegans (Caenorhabditis elegans N2)
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Wallaby (Notamacropus eugenii)
-----------
-
Opossum (Monodelphis domestica)
----------
Tasmanian devil (Sarcophilus harrisii)
----------
-
Chinese hamster CHOK1GS (Cricetulus griseus)
-------------
Chinese hamster CriGri (Cricetulus griseus)
----------
-
Naked mole-rat male (Heterocephalus glaber)
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Naked mole-rat female (Heterocephalus glaber)
--------------
Brazilian guinea pig (Cavia aperea)
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Squirrel (Ictidomys tridecemlineatus)
--------------
Bushbaby (Otolemur garnettii)
--------------
Tarsier (Carlito syrichta)
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Chimpanzee (Pan troglodytes)
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Cat (Felis catus)
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Golden Hamster (Mesocricetus auratus)
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Prairie vole (Microtus ochrogaster)
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--------
Olive baboon (Papio anubis)
-----------------
Shrew mouse (Mus pahari PAHARI_EIJ)
-----------------
Macaque (Macaca mulatta)
-----------------
Alpaca (Vicugna pacos)
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Mouse Lemur (Microcebus murinus)
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Sloth (Choloepus hoffmanni)
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Algerian mouse (Mus spretus SPRET/EiJ)
-----------------
Marmoset (Callithrix jacchus)
-----------------
Guinea Pig (Cavia porcellus)
-----------------
Kangaroo rat (Dipodomys ordii)
-----------------
Lesser hedgehog tenrec (Echinops telfairi)
-----------------
Cow (Bos taurus)
-----------------
Vervet-AGM (Chlorocebus sabaeus)
-----------------
Shrew (Sorex araneus)
-----------------
Human (Homo sapiens)
----------
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Tree Shrew (Tupaia belangeri)
--------------
Rabbit (Oryctolagus cuniculus)
--------------
Gibbon (Nomascus leucogenys)
--------------
Gorilla (Gorilla gorilla gorilla)
--------------
Degu (Octodon degus)
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Pika (Ochotona princeps)
-------
--------
Megabat (Pteropus vampyrus)
----
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Ryukyu mouse (Mus caroli CAROLI_EIJ)
--------------------
Orangutan (Pongo abelii)
--------------------
Long-tailed chinchilla (Chinchilla lanigera)
--------------------
Northern American deer mouse (Peromyscus maniculatus bairdii)
--------------------
Hyrax (Procavia capensis)
--------------------
Microbat (Myotis lucifugus)
--------------------
Lesser Egyptian jerboa (Jaculus jaculus)
--------------------
Mouse (Mus musculus reference (CL57BL6))
--------------------
Upper Galilee mountains blind mole rat (Nannospalax galili)
--------------------
Panda (Ailuropoda melanoleuca)
--------------------
Dolphin (Tursiops truncatus)
--------------------
Armadillo (Dasypus novemcinctus)
----------
-----------
Dog (Canis lupus familiaris)
-----------------------
Horse (Equus caballus)
-----------------------
Damara mole rat (Fukomys damarensis)
-----------------------
Sheep (Ovis aries)
-----------------------
Elephant (Loxodonta africana)
-----------------------
Hedgehog (Erinaceus europaeus)
-----------------------
Ferret (Mustela putorius furo)
-----------------------
Pig (Sus scrofa)
----------
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Rat (Rattus norvegicus)
-------------------------------
Platypus (Ornithorhynchus anatinus)
-
----------------
Duck (Anas platyrhynchos)
-------------------
Chicken (Gallus gallus)
-------------------
Flycatcher (Ficedula albicollis)
----------
-------------------
-
Turkey (Meleagris gallopavo)
-------------------
Zebra Finch (Taeniopygia guttata)
-------------------
Chinese softshell turtle (Pelodiscus sinensis)
-------------------
Anole lizard (Anolis carolinensis)
------------------------------------
Xenopus (Xenopus tropicalis)
-------------------------------------
Coelacanth (Latimeria chalumnae)
----------
----
Stickleback (Gasterosteus aculeatus)
----------------
Cave fish (Astyanax mexicanus)
----------------
Tilapia (Oreochromis niloticus)
----------------
Zebrafish (Danio rerio)
----------------
-
Platyfish (Xiphophorus maculatus)
----------
----------
Tetraodon (Tetraodon nigroviridis)
----------------------
Cod (Gadus morhua)
------------------------------------
----
Medaka (Oryzias latipes)
-------
----------
Amazon molly (Poecilia formosa)
----------------
Fugu (Takifugu rubripes)
-----------------
Spotted gar (Lepisosteus oculatus)
------------------------------------------
Lamprey (Petromyzon marinus)
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-
C.savignyi (Ciona savignyi)
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C.intestinalis (Ciona intestinalis)
------------------------------------------------
Saccharomyces cerevisiae (Saccharomyces cerevisiae S288C)