EnsemblEnsembl Home

Phylogenetic summary of ncRNA families

This page provides a summary of the Ensembl phylogenetic analysis of ncRNA families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Species-specific duplications Single-copy genes Multi-copy genes
----------------------------------------
-
Caenorhabditis elegans (Caenorhabditis elegans N2)
-------
Fruitfly (Drosophila melanogaster)
-------
Tilapia (Oreochromis niloticus)
-------
Cave fish (Astyanax mexicanus)
-------
Zebrafish (Danio rerio)
-------
Amazon molly (Poecilia formosa)
-------
-
Tetraodon (Tetraodon nigroviridis)
----------
Cod (Gadus morhua)
----------
Fugu (Takifugu rubripes)
---------------------------
----
Platyfish (Xiphophorus maculatus)
-------------
Medaka (Oryzias latipes)
-------------
Stickleback (Gasterosteus aculeatus)
--------------
Spotted gar (Lepisosteus oculatus)
----------
Wallaby (Notamacropus eugenii)
--------------
-
Opossum (Monodelphis domestica)
-------------
Tasmanian devil (Sarcophilus harrisii)
-------------
-
Naked mole-rat male (Heterocephalus glaber)
----------------
Naked mole-rat female (Heterocephalus glaber)
-------------
-
Chinese hamster CHOK1GS (Cricetulus griseus)
----------------
Chinese hamster CriGri (Cricetulus griseus)
-----------------
Dolphin (Tursiops truncatus)
-----------------
Prairie vole (Microtus ochrogaster)
-----------------
Olive baboon (Papio anubis)
-----------------
Gibbon (Nomascus leucogenys)
-----------------
Microbat (Myotis lucifugus)
-----------------
Tarsier (Carlito syrichta)
-----------------
Guinea Pig (Cavia porcellus)
-----------------
Chimpanzee (Pan troglodytes)
----------
--------
Ryukyu mouse (Mus caroli CAROLI_EIJ)
--------------------
Rabbit (Oryctolagus cuniculus)
--------------------
Alpaca (Vicugna pacos)
--------------------
Marmoset (Callithrix jacchus)
--------------------
Mouse Lemur (Microcebus murinus)
--------------------
Pig (Sus scrofa)
--------------------
Cow (Bos taurus)
----
-----------------
Bushbaby (Otolemur garnettii)
-----------------------
Damara mole rat (Fukomys damarensis)
-----------------------
Degu (Octodon degus)
-----------------------
Mouse (Mus musculus reference (CL57BL6))
-----------------------
Shrew (Sorex araneus)
-----------------------
Squirrel (Ictidomys tridecemlineatus)
-----------------------
Kangaroo rat (Dipodomys ordii)
----------
--------------
Hyrax (Procavia capensis)
-------------------
-----
Gorilla (Gorilla gorilla gorilla)
-----------------------
Sheep (Ovis aries)
-----------------------
Cat (Felis catus)
-----------------------
Armadillo (Dasypus novemcinctus)
-----------------------
Golden Hamster (Mesocricetus auratus)
-----------------------
Macaque (Macaca mulatta)
----------------
--------
Panda (Ailuropoda melanoleuca)
--------------------------
Orangutan (Pongo abelii)
--------------------------
Northern American deer mouse (Peromyscus maniculatus bairdii)
--------------------------
Sloth (Choloepus hoffmanni)
--------------------------
Elephant (Loxodonta africana)
--------------------------
Pika (Ochotona princeps)
--------------------------
Brazilian guinea pig (Cavia aperea)
--------------------------
Shrew mouse (Mus pahari PAHARI_EIJ)
--------------------------
Long-tailed chinchilla (Chinchilla lanigera)
--------------------------
Lesser hedgehog tenrec (Echinops telfairi)
-
-----------------------
Ferret (Mustela putorius furo)
--------------------------
Lesser Egyptian jerboa (Jaculus jaculus)
----------
-----------------
Dog (Canis lupus familiaris)
-------------------
-----------
Algerian mouse (Mus spretus SPRET/EiJ)
--------------------------------
Hedgehog (Erinaceus europaeus)
--------------------------------
Rat (Rattus norvegicus)
--------------------------------
Vervet-AGM (Chlorocebus sabaeus)
--------------------------------
Upper Galilee mountains blind mole rat (Nannospalax galili)
--------------------------------
Megabat (Pteropus vampyrus)
--------------------------------
Human (Homo sapiens)
--------------------------------
Tree Shrew (Tupaia belangeri)
-------------------
--------------
Horse (Equus caballus)
-------
-------------------------------
Platypus (Ornithorhynchus anatinus)
-------------------------
Chinese softshell turtle (Pelodiscus sinensis)
-------------------------
Flycatcher (Ficedula albicollis)
-------------------------
Zebra Finch (Taeniopygia guttata)
-------------
-------------------
-
Chicken (Gallus gallus)
-------------------
Turkey (Meleagris gallopavo)
-------------------
Anole lizard (Anolis carolinensis)
-------------------
Duck (Anas platyrhynchos)
------------------------------------
Xenopus (Xenopus tropicalis)
-------------------------------------
Coelacanth (Latimeria chalumnae)
------------------------------------------
Lamprey (Petromyzon marinus)
---------------------------------------
-
C.savignyi (Ciona savignyi)
-------
C.intestinalis (Ciona intestinalis)
------------------------------------------------
Saccharomyces cerevisiae (Saccharomyces cerevisiae S288C)