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Phylogenetic summary of ncRNA families

This page provides a summary of the Ensembl phylogenetic analysis of ncRNA families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Species-specific duplications Single-copy genes Multi-copy genes
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-
Fruitfly (Drosophila melanogaster)
-------
Caenorhabditis elegans (Caenorhabditis elegans N2)
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Tetraodon (Tetraodon nigroviridis)
-------
Tilapia (Oreochromis niloticus)
-------
Zebrafish (Danio rerio)
-------
Platyfish (Xiphophorus maculatus)
-------
-
Stickleback (Gasterosteus aculeatus)
----------
Medaka (Oryzias latipes)
----------
Cave fish (Astyanax mexicanus)
-----------------------
----
Amazon molly (Poecilia formosa)
-------------
Cod (Gadus morhua)
-------------
Fugu (Takifugu rubripes)
--------------
Spotted gar (Lepisosteus oculatus)
----------
Tasmanian devil (Sarcophilus harrisii)
----------
-
Wallaby (Notamacropus eugenii)
-------------
Opossum (Monodelphis domestica)
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Macaque (Macaca mulatta)
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Hedgehog (Erinaceus europaeus)
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Tarsier (Carlito syrichta)
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Cow (Bos taurus)
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Vervet-AGM (Chlorocebus sabaeus)
-------------
Rabbit (Oryctolagus cuniculus)
-------------
Kangaroo rat (Dipodomys ordii)
-------------
Mouse Lemur (Microcebus murinus)
----------
----
Dog (Canis lupus familiaris)
----------------
Alpaca (Vicugna pacos)
----------------
Marmoset (Callithrix jacchus)
----------------
Sloth (Choloepus hoffmanni)
----------------
Pika (Ochotona princeps)
----
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Horse (Equus caballus)
-------------------
Sheep (Ovis aries)
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Bushbaby (Otolemur garnettii)
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Pig (Sus scrofa)
-------------------
Tree Shrew (Tupaia belangeri)
-------------------
Microbat (Myotis lucifugus)
----------
-------
-
Olive baboon (Papio anubis)
-------------------
Elephant (Loxodonta africana)
-------------------
Megabat (Pteropus vampyrus)
-------------------
Mouse (Mus musculus reference (CL57BL6))
-------------------
Mouse SPRET/EiJ (Mus spretus SPRET/EiJ)
----------------
----
Rat (Rattus norvegicus)
----------------------
Orangutan (Pongo abelii)
----------------------
Squirrel (Ictidomys tridecemlineatus)
----------------------
Chimpanzee (Pan troglodytes)
----------------------
Gorilla (Gorilla gorilla gorilla)
----------------------
Ferret (Mustela putorius furo)
----------------------
Armadillo (Dasypus novemcinctus)
----------------------
Human (Homo sapiens)
----------------------
Guinea Pig (Cavia porcellus)
-
-------------------
Lesser hedgehog tenrec (Echinops telfairi)
----------
-------
-------
Shrew (Sorex araneus)
----------------------------
Cat (Felis catus)
----------------------------
Panda (Ailuropoda melanoleuca)
----------------------------
Gibbon (Nomascus leucogenys)
----------------------------
Dolphin (Tursiops truncatus)
----------------------------
Hyrax (Procavia capensis)
---------------------------------
Platypus (Ornithorhynchus anatinus)
-------------------
-------
Chinese softshell turtle (Pelodiscus sinensis)
-------
-------------------
Anole lizard (Anolis carolinensis)
-------------------------
Zebra Finch (Taeniopygia guttata)
------------------------------
-
Turkey (Meleagris gallopavo)
-------------
-------
Chicken (Gallus gallus)
-------------------
Flycatcher (Ficedula albicollis)
-------------------
Duck (Anas platyrhynchos)
--------------------------------
Xenopus (Xenopus tropicalis)
---------------------------------
Coelacanth (Latimeria chalumnae)
--------------------------------------
Lamprey (Petromyzon marinus)
-----------------------------------
-
C.savignyi (Ciona savignyi)
-------
C.intestinalis (Ciona intestinalis)
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Saccharomyces cerevisiae (Saccharomyces cerevisiae S288C)