Phylogenetic summary of ncRNA families

This page provides a summary of the Ensembl phylogenetic analysis of ncRNA families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Species-specific duplications Single-copy genes Multi-copy genes
----
Common wombat (Vombatus ursinus)
----
-
Wallaby (Notamacropus eugenii)
----
----
Koala (Phascolarctos cinereus)
-----------
Opossum (Monodelphis domestica)
-----------
Tasmanian devil (Sarcophilus harrisii)
-------
Algerian mouse (Mus spretus strain SPRET/EiJ)
-------
Eurasian red squirrel (Sciurus vulgaris)
-------
Arctic ground squirrel (Urocitellus parryii)
-------
Microbat (Myotis lucifugus)
-------
Guinea Pig (Cavia porcellus)
-------
Polar bear (Ursus maritimus)
-------
Elephant (Loxodonta africana)
-------
Hedgehog (Erinaceus europaeus)
-------
Siberian musk deer (Moschus moschiferus)
-------
Hybrid - Bos Indicus (Bos indicus x Bos taurus)
-------
American black bear (Ursus americanus)
-------
Rat (Rattus norvegicus strain BN/NHsdMcwi)
-------
Vaquita (Phocoena sinus)
-------
Bolivian squirrel monkey (Saimiri boliviensis boliviensis)
-------
Ma's night monkey (Aotus nancymaae)
-------
Chimpanzee (Pan troglodytes)
-------
Shrew (Sorex araneus)
-------
Degu (Octodon degus)
-------
Wild yak (Bos mutus)
-------
Golden snub-nosed monkey (Rhinopithecus roxellana)
-------
Squirrel (Ictidomys tridecemlineatus)
----
----
Steppe mouse (Mus spicilegus)
----------
Goat (Capra hircus reference breed)
----------
Dolphin (Tursiops truncatus)
----------
Cow (Bos taurus reference breed)
----------
Shrew mouse (Mus pahari strain PAHARI_EIJ)
----------
Gorilla (Gorilla gorilla gorilla)
----------
Ryukyu mouse (Mus caroli strain CAROLI_EIJ)
----------
Dingo (Canis lupus dingo)
----------
White-tufted-ear marmoset (Callithrix jacchus)
----------
Domestic yak (Bos grunniens)
----------
Alpine marmot (Marmota marmota marmota)
----------
Horse (Equus caballus breed thoroughbred)
----------
American bison (Bison bison bison)
----------
Tiger (Panthera tigris altaica)
----------
Macaque (Macaca mulatta)
----------
Human (Homo sapiens)
----------
American mink (Neogale vison)
----------
Rabbit (Oryctolagus cuniculus)
----------
Olive baboon (Papio anubis)
----------
Upper Galilee mountains blind mole rat (Nannospalax galili)
----------
Narwhal (Monodon monoceros)
----------
Greater horseshoe bat (Rhinolophus ferrumequinum)
----------
Tree Shrew (Tupaia belangeri)
----------
Red fox (Vulpes vulpes)
-----------
-
Lesser Egyptian jerboa (Jaculus jaculus)
-------
Bonobo (Pan paniscus)
-------
Kangaroo rat (Dipodomys ordii)
-------
Lesser hedgehog tenrec (Echinops telfairi)
-------
Greater bamboo lemur (Prolemur simus)
-------
Panamanian white-faced capuchin (Cebus imitator)
-------
Cat (Felis catus)
-------
Drill (Mandrillus leucophaeus)
-------
Sooty mangabey (Cercocebus atys)
-------
Coquerel's sifaka (Propithecus coquereli)
-------
Tarsier (Carlito syrichta)
----
----
Hyrax (Procavia capensis)
----------
Chacoan peccary (Catagonus wagneri)
----------
Leopard (Panthera pardus)
----------
Northern American deer mouse (Peromyscus maniculatus bairdii)
----------
Alpaca (Vicugna pacos)
----------
Armadillo (Dasypus novemcinctus)
----------
Beluga whale (Delphinapterus leucas)
----------
Sumatran orangutan (Pongo abelii)
----------
Giant panda (Ailuropoda melanoleuca reference isolate)
----------
Sloth (Choloepus hoffmanni)
----------
Megabat (Pteropus vampyrus)
----------
Crab-eating macaque (Macaca fascicularis)
----------
Ferret (Mustela putorius furo)
----------
Long-tailed chinchilla (Chinchilla lanigera)
----------
Pika (Ochotona princeps)
----------
Arabian camel (Camelus dromedarius)
----------
Chinese hamster CHOK1GS (Cricetulus griseus CHOK1GS_HDv1)
----------
Naked mole-rat female (Heterocephalus glaber reference strain)
----------
Sheep (Ovis aries reference breed)
----------
Mouse Lemur (Microcebus murinus)
----------
Donkey (Equus asinus reference breed)
----------
Bushbaby (Otolemur garnettii)
----------
Golden Hamster (Mesocricetus auratus)
----------
Dog (Canis lupus familiaris reference breed)
----
-------
Blue whale (Balaenoptera musculus)
-------------
Pig-tailed macaque (Macaca nemestrina)
-------------
Yarkand deer (Cervus hanglu yarkandensis)
-------------
Gibbon (Nomascus leucogenys)
-------------
Prairie vole (Microtus ochrogaster)
-------------
Pig (Sus scrofa reference breed)
-------------
Sperm whale (Physeter catodon)
-------------
Lion (Panthera leo)
-------------
Mouse (Mus musculus reference (CL57BL6) strain)
-------------
Black snub-nosed monkey (Rhinopithecus bieti)
-------------
Vervet-AGM (Chlorocebus sabaeus)
----------------------
Platypus (Ornithorhynchus anatinus)
----------
Japanese quail (Coturnix japonica)
----------
Mainland tiger snake (Notechis scutatus)
----------
Pink-footed goose (Anser brachyrhynchus)
----------
Abingdon island giant tortoise (Chelonoidis abingdonii)
----------
Eastern brown snake (Pseudonaja textilis)
----------
Zebra finch (Taeniopygia guttata)
----------
Argentine black and white tegu (Salvator merianae)
----
-------
Green anole (Anolis carolinensis reference strain)
-------------
Tuatara (Sphenodon punctatus)
-------------
Three-toed box turtle (Terrapene carolina triunguis)
-------------
Blue-ringed sea krait (Laticauda laticaudata)
-------------
Golden eagle (Aquila chrysaetos chrysaetos)
-------------
Common wall lizard (Podarcis muralis)
----------------------
-
Duck (Anas platyrhynchos platyrhynchos)
----------
Chicken (Gallus gallus reference breed)
----------
Goodes thornscrub tortoise (Gopherus evgoodei)
----------
Australian saltwater crocodile (Crocodylus porosus)
----------
Medium ground-finch (Geospiza fortis)
----
-------
Turkey (Meleagris gallopavo reference strain)
-------------
Great Tit (Parus major)
-------------
Collared flycatcher (Ficedula albicollis)
-------------
Common canary (Serinus canaria)
-------------
African ostrich (Struthio camelus australis)
-------------
Kakapo (Strigops habroptila)
-------------
Painted turtle (Chrysemys picta bellii)
-------------
Indian cobra (Naja naja)
-------------
Chinese softshell turtle (Pelodiscus sinensis)
--------------------------
-
Leishan spiny toad (Leptobrachium leishanense)
----------
Tropical clawed frog (Xenopus tropicalis)
-------------------------------
Coelacanth (Latimeria chalumnae)
-------
-
Paramormyrops kingsleyae (Paramormyrops kingsleyae)
----------
Asian bonytongue (Scleropages formosus)
----------
Clown anemonefish (Amphiprion ocellaris)
----------
Zebrafish (Danio rerio)
----------
Midas cichlid (Amphilophus citrinellus)
----------
Lumpfish (Cyclopterus lumpus)
----------
Denticle herring (Denticeps clupeoides)
----------
Atlantic cod (Gadus morhua)
----------
Huchen (Hucho hucho)
----------
Channel bull blenny (Cottoperca gobio)
----------
Ballan wrasse (Labrus bergylta)
----------
Javanese ricefish (Oryzias javanicus)
----------
Atlantic herring (Clupea harengus)
----------
Eastern happy (Astatotilapia calliptera)
----------
Atlantic salmon (Salmo salar)
----------
Chinese medaka (Oryzias sinensis)
-------
----
Nile tilapia (Oreochromis niloticus)
-------------
Climbing perch (Anabas testudineus)
-------------
Common carp (Cyprinus carpio carpio)
----
----------
Pinecone soldierfish (Myripristis murdjan)
----------------
Electric eel (Electrophorus electricus)
----------------
Chinook salmon (Oncorhynchus tshawytscha)
----------------
Siamese fighting fish (Betta splendens)
----------------
Bicolor damselfish (Stegastes partitus)
----------------
Platyfish (Xiphophorus maculatus)
----------------
Channel catfish (Ictalurus punctatus)
----------------
Sheepshead minnow (Cyprinodon variegatus)
----------------
Amazon molly (Poecilia formosa)
----------------
Mummichog (Fundulus heteroclitus)
----------------
Brown trout (Salmo trutta)
----------------
Sailfin molly (Poecilia latipinna)
----------------
Monterrey platyfish (Xiphophorus couchianus)
-------------
-
Coho salmon (Oncorhynchus kisutch)
-------------
Orange clownfish (Amphiprion percula)
-------------
Rainbow trout (Oncorhynchus mykiss)
-------------
Makobe Island cichlid (Pundamilia nyererei)
-------------
Tiger tail seahorse (Hippocampus comes)
-------------
Turquoise killifish (Nothobranchius furzeri)
-------------
Pike-perch (Sander lucioperca)
----------
----
Zebra mbuna (Maylandia zebra)
----------------
Gilthead seabream (Sparus aurata)
----------------
Large yellow croaker (Larimichthys crocea)
----
-------------
Indian medaka (Oryzias melastigma)
-------------------
Northern pike (Esox lucius)
-------------------
Japanese medaka HdrR (Oryzias latipes)
-------------------
Burton's mouthbrooder (Haplochromis burtoni)
-------------------
Stickleback (Gasterosteus aculeatus)
-------------------
Goldfish (Carassius auratus)
-------------------
Turbot (Scophthalmus maximus)
-------------------
Guppy (Poecilia reticulata)
-------------------
Tongue sole (Cynoglossus semilaevis)
----------------------
-------
Greater amberjack (Seriola dumerili)
----------------
Red-bellied piranha (Pygocentrus nattereri)
----------------
Barramundi perch (Lates calcarifer)
----
-------------
Zig-zag eel (Mastacembelus armatus)
-------------------
Yellowtail amberjack (Seriola lalandi dorsalis)
-------------------
European seabass (Dicentrarchus labrax)
-------------------
Tetraodon (Tetraodon nigroviridis)
-------------------
Spiny chromis (Acanthochromis polyacanthus)
-------------------
Mangrove rivulus (Kryptolebias marmoratus)
-------------------
Lyretail cichlid (Neolamprologus brichardi)
----
----------------
Mexican tetra (Astyanax mexicanus)
----------------------
Fugu (Takifugu rubripes)
---------------------------
Spotted gar (Lepisosteus oculatus)
----------------------------
Reedfish (Erpetoichthys calabaricus)
----
------------------------------------------
Elephant shark (Callorhinchus milii)
---------------------------------------------
-
Hagfish (Eptatretus burgeri)
-------------
Lamprey (Petromyzon marinus)
-
-------------------------------------------
-
C.savignyi (Ciona savignyi)
----------
C.intestinalis (Ciona intestinalis)
-----------------------------------------------
-
Drosophila melanogaster (Fruit fly) (Drosophila melanogaster)
-------
Caenorhabditis elegans (Nematode, N2) (Caenorhabditis elegans strain N2)
----------------------------------------------------
Saccharomyces cerevisiae (Saccharomyces cerevisiae S288C)