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Statistics on ncRNA trees

Since release 58, Compara computes phylogenetic trees for the non-coding RNAs annotating by RFAM. The manuscript is in preparation. More information can be obtained here

List of available views:

This is an overview of the various statistics. The phylogenetic tree summarizes all the piecharts found in the other views.

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene events Default genes Species-specific duplications Gene splits
Gene-tree coverage Genes in multi-species trees Orphaned genes Genes in single-species trees
------------------------------------
-
C.elegans
-------
Fruitfly
-------
Wallaby
-------
-
Tasmanian devil
----------
Opossum
----------
Alpaca
----------
Tenrec
----------
Mouse
----------
Dolphin
----------
Gorilla
----------
Guinea Pig
----------
Squirrel
----------
Elephant
-------
----
Panda
-------------
Marmoset
-------------
Shrew
-------------
Microbat
-------------
Sheep
-------------
Rabbit
-------------
Cow
-------------
Chimpanzee
-------------
Gibbon
-------------
Pika
-------------
Tree Shrew
----------
-
Tarsier
----------
Cat
----------
Chlorocebus sabaeus
----------
Mouse Lemur
-------
----
Hedgehog
-------------
Dog
-------------
Macaque
----
----------
Rat
----------------
Armadillo
----------------
Bushbaby
----------------
Olive baboon
----------------
Horse
----------------
Sloth
----------------
Hyrax
----------
-------
Megabat
-------------------
Orangutan
-------------------
Kangaroo rat
-------------------
Pig
-------------------
Human
-------------------
Ferret
------------------------
Platypus
----------
-------
Turkey
-------------------
Flycatcher
-------------------
Chinese softshell turtle
------------------------
-
Chicken
-
-------
-------
Duck
-------------------
Zebra Finch
-------------------
Anole Lizard
--------------------------------
X.tropicalis
---------------------------------
Coelacanth
-------------
Stickleback
----------
----
Platyfish
----------------
Amazon molly
----------------
Fugu
----------------
-
Tetraodon
-------------------
Tilapia
----------
----------
Zebrafish
--------------------------------
----
Cod
-------------------
Cave fish
-------
----------
Medaka
-----------------
Spotted gar
--------------------------------------
Lamprey
-----------------------------------
-
C.intestinalis
-------
C.savignyi
--------------------------------------------
S.cerevisiae