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Statistics on protein trees

The protein tree pipeline is described at the following page.

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Statistics about the gene-tree nodes

Species# Nodes# speciation nodes# duplication nodes# dubious nodesNode typesAverage duplication confidence scoreAverage duplication confidence score (non-dubious nodes)
Animals and Fungi (Opisthokonta)22202194242
42.3 %45.9 %
Bilateral animals (Bilateria)1193372313823879
44.0 %54.1 %
Chordates (Chordata)975274291940383
32.3 %38.7 %
Vertebrates (Vertebrata)1280277124108982
38.5 %47.7 %
Bony vertebrates (Euteleostomi)314531945482433756
25.1 %36.6 %
Ray-finned fishes (Neopterygii)16607150411284282
37.3 %45.4 %
Teleost fishes (Clupeocephala)24144196693998477
50.6 %56.6 %
Teleost fishes (Acanthomorphata)1904717399699949
20.4 %48.1 %
Teleost fishes (Percomorphaceae)26182210486274507
4.5 %36.5 %
Teleost fishes (Eupercaria)1300212984135
31.5 %43.6 %
Puffers (Tetraodontidae)15462152721900
70.5 %70.5 %
Teleost fishes (Ovalentaria)1810517307310488
21.3 %54.9 %
Silverside fishes (Atherinomorphae)14200140901037
51.7 %55.2 %
Live-bearing aquarium fishes (Poeciliinae)19539188546850
70.3 %70.3 %
Teleost fishes (Otophysa)17860171397210
72.6 %72.6 %
Lobe-finned fish (Sarcopterygii)16547144446811422
5.8 %18.0 %
Tetrapods (Tetrapoda)1420512892642671
12.0 %24.6 %
Amniotes (Amniota)221201810317272290
8.0 %18.6 %
Mammals (Mammalia)171011404316221436
11.5 %21.6 %
Marsupials and Placental mammals (Theria)197161711114011204
16.0 %29.7 %
Marsupials (Marsupialia)28963279899740
66.0 %66.0 %
Placental mammals (Eutheria)7341547436522820751
3.6 %18.1 %
Xenarthran mammals (Xenarthra)773176201110
64.4 %64.4 %
African mammals (Afrotheria)21095209421530
63.9 %63.9 %
Placental mammals (Boreoeutheria)409813152413968061
2.1 %14.5 %
Laurasiatherian mammals (Laurasiatheria)74306705556783073
4.3 %23.8 %
Bats (Chiroptera)9295928690
55.6 %55.6 %
Cetaceans and Even-toed ungulates (Cetartiodactyla)371733692223516
44.8 %47.9 %
Bovids (Bovidae)16976161568200
75.7 %75.7 %
Carnivores (Carnivora)1639916074191134
27.9 %47.6 %
Caniforms (Caniformia)30582303722100
59.8 %59.8 %
Insectivore mammals (Insectivora)49404919210
71.4 %71.4 %
Primates and Rodents (Euarchontoglires)44370386235905157
2.1 %20.4 %
Rodents and Rabbits (Glires)151971440081716
3.6 %35.4 %
Rabbits and Pikas (Lagomorpha)10373102631100
66.4 %66.4 %
Rodents (Rodentia)136901308880522
5.7 %42.9 %
Squirrels and Old World rodents (Sciurognathi)2092320857624
58.0 %61.7 %
Old World rodents (Murinae)188271769011370
82.7 %82.7 %
Primates (Primates)1774217182152408
8.4 %31.1 %
Dry-nosed primates (Haplorrhini)896688925717
34.2 %44.4 %
Simians (Simiiformes)1898917708990291
29.2 %37.8 %
Apes and Old World monkeys (Catarrhini)23000211391076785
21.5 %37.1 %
Old World monkeys (Cercopithecinae)33254326456090
60.7 %60.7 %
Apes (Hominoidea)1733716729226382
13.9 %37.3 %
Great apes (Hominidae)174251709922898
33.0 %47.2 %
Hominines (Homininae)33382330683140
57.9 %57.9 %
Wet nose lemurs (Strepsirrhini)1003110000310
62.9 %62.9 %
Reptiles and birds (Sauria)1369813132291275
21.0 %40.8 %
Birds and turtles (Archelosauria)126521244913667
26.2 %39.2 %
Birds (Neognathae)1452414079243202
23.1 %42.3 %
Fowls (Galloanserae)12997128877733
34.8 %49.8 %
Turkeys (Phasianidae)12416122851310
68.3 %68.3 %
Perching birds (Passeriformes)12966128271390
69.1 %69.1 %
Ciona sea squirts (Ciona)9302796113410
78.4 %78.4 %
Arthropods and nematodes (Ecdysozoa)374836191290
62.8 %62.8 %