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Statistics on protein trees

The protein tree pipeline is described at the following page.

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Statistics about the gene-tree nodes

Species# Nodes# speciation nodes# duplication nodes# dubious nodesNode typesAverage duplication confidence scoreAverage duplication confidence score (non-dubious nodes)
Animals and Fungi (Opisthokonta)22382205285
41.5 %48.9 %
Bilateral animals (Bilateria)1199572623842891
44.3 %54.6 %
Chordates (Chordata)966974021849418
31.7 %38.9 %
Vertebrates (Vertebrata)1272377024163858
38.7 %46.7 %
Bony vertebrates (Euteleostomi)311891940681573626
25.7 %37.2 %
Lobe-finned fish (Sarcopterygii)16659145177491393
7.4 %21.1 %
Tetrapods (Tetrapoda)1422712972560695
10.1 %22.7 %
Amniotes (Amniota)222251812518102290
8.0 %18.1 %
Reptiles and birds (Sauria)1370513115291299
19.9 %40.3 %
Birds and turtles (Archelosauria)126261243513061
28.8 %42.3 %
Birds (Neognathae)1451814068247203
23.2 %42.2 %
Perching birds (Passeriformes)12956128191370
69.3 %69.3 %
Fowls (Galloanserae)13026128999631
37.0 %49.0 %
Turkeys (Phasianidae)12429122811480
67.6 %67.6 %
Mammals (Mammalia)170781404916251404
11.4 %21.2 %
Marsupials and Placental mammals (Theria)197921719214191181
15.8 %28.9 %
Marsupials (Marsupialia)28942279779650
65.4 %65.4 %
Placental mammals (Eutheria)7347447474519020810
3.5 %17.6 %
Placental mammals (Boreoeutheria)407463137114147961
2.3 %15.0 %
Primates and Rodents (Euarchontoglires)44109384995435067
2.0 %20.6 %
Rodents and Rabbits (Glires)152401446074706
3.4 %35.5 %
Rabbits and Pikas (Lagomorpha)10367102581090
70.6 %70.6 %
Rodents (Rodentia)137211311074537
5.2 %43.2 %
Squirrels and Old World rodents (Sciurognathi)2096420901567
51.7 %58.2 %
Old World rodents (Murinae)189601794110190
81.6 %81.6 %
Primates (Primates)1790717336168403
9.6 %32.6 %
Dry-nosed primates (Haplorrhini)905389656028
26.5 %38.8 %
Simians (Simiiformes)1898717699998290
29.4 %38.0 %
Apes and Old World monkeys (Catarrhini)22999211191055825
20.7 %36.9 %
Apes (Hominoidea)1741216782250380
14.6 %36.7 %
Great apes (Hominidae)174301712121693
33.1 %47.4 %
Hominines (Homininae)33285329892960
59.2 %59.2 %
Old World monkeys (Cercopithecinae)33251326326190
62.0 %62.0 %
Wet nose lemurs (Strepsirrhini)1005710031260
63.5 %63.5 %
Laurasiatherian mammals (Laurasiatheria)74448706896693090
3.9 %22.0 %
Bats (Chiroptera)92969280160
53.1 %53.1 %
Carnivores (Carnivora)1639216075190127
28.7 %47.9 %
Caniforms (Caniformia)30579303592200
60.3 %60.3 %
Cetaceans and Even-toed ungulates (Cetartiodactyla)370833683623314
44.7 %47.3 %
Bovids (Bovidae)16852160997530
76.6 %76.6 %
Insectivore mammals (Insectivora)50345012220
70.5 %70.5 %
Xenarthran mammals (Xenarthra)766875651030
63.6 %63.6 %
African mammals (Afrotheria)21179210211580
64.6 %64.6 %
Ray-finned fishes (Neopterygii)16606150251275306
36.4 %45.1 %
Teleost fishes (Clupeocephala)23998195903959449
51.6 %57.4 %
Teleost fishes (Otophysa)17710170416690
73.4 %73.4 %
Teleost fishes (Acanthomorphata)1909617431698967
20.2 %48.2 %
Teleost fishes (Percomorphaceae)26078209736634442
4.6 %35.2 %
Teleost fishes (Ovalentaria)1801817294279445
20.8 %54.1 %
Silverside fishes (Atherinomorphae)142311411110911
50.0 %55.0 %
Live-bearing aquarium fishes (Poeciliinae)19563188876760
70.7 %70.7 %
Teleost fishes (Eupercaria)130781306297
21.9 %38.9 %
Puffers (Tetraodontidae)15482153051770
71.2 %71.2 %
Ciona sea squirts (Ciona)9351794714040
77.6 %77.6 %
Arthropods and nematodes (Ecdysozoa)372736041230
63.4 %63.4 %