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Statistics on protein trees

The protein tree pipeline is described at the following page.

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Statistics about the gene-tree nodes

Species# Nodes# speciation nodes# duplication nodes# dubious nodesNode typesAverage duplication confidence scoreAverage duplication confidence score (non-dubious nodes)
Animals and Fungi (Opisthokonta)22482203414
38.9 %42.7 %
Bilateral animals (Bilateria)1208172743870937
43.7 %54.3 %
Chordates (Chordata)970274201884398
31.6 %38.3 %
Vertebrates (Vertebrata)1282476934206925
37.8 %46.2 %
Bony vertebrates (Euteleostomi)313231946180843778
25.3 %37.1 %
Lobe-finned fish (Sarcopterygii)16600144577331410
6.8 %20.0 %
Tetrapods (Tetrapoda)1421912914638667
13.0 %26.5 %
Amniotes (Amniota)221741811317612300
7.1 %16.5 %
Mammals (Mammalia)171001409016181392
11.8 %21.9 %
Marsupials and Placental mammals (Theria)197591711914471193
16.3 %29.7 %
Marsupials (Marsupialia)28918279569620
65.0 %65.0 %
Placental mammals (Eutheria)7346647496520820762
3.6 %17.8 %
Placental mammals (Boreoeutheria)406583141114247823
2.2 %14.2 %
Primates and Rodents (Euarchontoglires)44355386775615117
2.2 %22.1 %
Primates (Primates)1773617191141404
9.1 %35.2 %
Dry-nosed primates (Haplorrhini)909390275214
27.4 %34.8 %
Simians (Simiiformes)1894117698961282
29.6 %38.3 %
Apes and Old World monkeys (Catarrhini)23043211491127767
21.9 %36.9 %
Apes (Hominoidea)1737616760232384
14.0 %37.2 %
Great apes (Hominidae)174691715122494
33.1 %47.0 %
Hominines (Homininae)33313330113020
60.2 %60.2 %
Old World monkeys (Cercopithecinae)33216326245920
61.6 %61.6 %
Wet nose lemurs (Strepsirrhini)100129985270
63.0 %63.0 %
Rodents and Rabbits (Glires)151821440385694
3.7 %33.9 %
Rabbits and Pikas (Lagomorpha)10404102951090
66.1 %66.1 %
Rodents (Rodentia)137941319067537
4.9 %43.9 %
Squirrels and Old World rodents (Sciurognathi)2088920816694
55.7 %58.9 %
Old World rodents (Murinae)188481779710510
82.8 %82.8 %
Laurasiatherian mammals (Laurasiatheria)74443706666783099
4.1 %22.7 %
Carnivores (Carnivora)1643116094190147
26.5 %47.1 %
Caniforms (Caniformia)30561303522090
59.9 %59.9 %
Insectivore mammals (Insectivora)50395013260
69.2 %69.2 %
Bats (Chiroptera)9357934980
62.5 %62.5 %
Cetaceans and Even-toed ungulates (Cetartiodactyla)370273681420211
45.7 %48.2 %
Bovids (Bovidae)16894161227720
76.2 %76.2 %
African mammals (Afrotheria)21125209641610
64.1 %64.1 %
Xenarthran mammals (Xenarthra)769875821160
64.7 %64.7 %
Reptiles and birds (Sauria)1368913101291297
18.7 %37.7 %
Birds and turtles (Archelosauria)126431244413564
27.7 %40.8 %
Birds (Neognathae)1453414074248212
23.0 %42.6 %
Perching birds (Passeriformes)12967128341330
69.2 %69.2 %
Fowls (Galloanserae)13004128908133
36.0 %50.6 %
Turkeys (Phasianidae)12452123061460
67.8 %67.8 %
Ray-finned fishes (Neopterygii)16580150301263287
36.9 %45.3 %
Teleost fishes (Clupeocephala)23988195923968428
51.7 %57.2 %
Teleost fishes (Acanthomorphata)19203174477351021
19.6 %46.7 %
Teleost fishes (Percomorphaceae)26134209896414504
4.3 %34.8 %
Teleost fishes (Ovalentaria)1801817240296482
20.4 %53.7 %
Silverside fishes (Atherinomorphae)14223141141027
51.2 %54.7 %
Live-bearing aquarium fishes (Poeciliinae)19558188766820
71.0 %71.0 %
Teleost fishes (Eupercaria)129821296895
23.8 %37.0 %
Puffers (Tetraodontidae)15465152831820
71.4 %71.4 %
Teleost fishes (Otophysa)17731170616700
72.6 %72.6 %
Ciona sea squirts (Ciona)9328796213660
78.6 %78.6 %
Arthropods and nematodes (Ecdysozoa)376236081540
62.7 %62.7 %