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Statistics on protein trees

The protein tree pipeline is described at the following page.

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Statistics about the gene-tree nodes

Species# Nodes# speciation nodes# duplication nodes# dubious nodesNode typesAverage duplication confidence scoreAverage duplication confidence score (non-dubious nodes)
Animals and Fungi (Opisthokonta)22322200275
40.0 %47.4 %
Bilateral animals (Bilateria)1200472623820922
44.2 %54.8 %
Arthropods and nematodes (Ecdysozoa)375536231320
61.7 %61.7 %
Chordates (Chordata)978974141927448
32.2 %39.7 %
Ciona sea squirts (Ciona)9316795813580
78.6 %78.6 %
Vertebrates (Vertebrata)1272276984055969
37.9 %47.0 %
Bony vertebrates (Euteleostomi)313171937582063736
25.4 %36.9 %
Ray-finned fishes (Neopterygii)16561149921272297
37.6 %46.4 %
Teleost fishes (Clupeocephala)23986195933947446
51.6 %57.4 %
Teleost fishes (Otophysa)17664170016630
73.1 %73.1 %
Teleost fishes (Acanthomorphata)1912817451695982
20.0 %48.2 %
Teleost fishes (Percomorphaceae)26136209646464526
4.5 %36.2 %
Teleost fishes (Ovalentaria)1801717247306464
21.4 %53.8 %
Silverside fishes (Atherinomorphae)14249141401018
49.8 %53.8 %
Live-bearing aquarium fishes (Poeciliinae)19577188627150
69.9 %69.9 %
Teleost fishes (Eupercaria)1302213006115
24.0 %34.8 %
Puffers (Tetraodontidae)15446152661800
71.1 %71.1 %
Lobe-finned fish (Sarcopterygii)16415144166621337
6.1 %18.4 %
Tetrapods (Tetrapoda)1427212903676693
12.2 %24.7 %
Amniotes (Amniota)221901810417782308
7.7 %17.6 %
Mammals (Mammalia)169881404316371308
11.7 %21.0 %
Marsupials and Placental mammals (Theria)196181711513871116
16.4 %29.6 %
Marsupials (Marsupialia)28974280069680
65.6 %65.6 %
Placental mammals (Eutheria)7370347542526520896
3.6 %18.1 %
African mammals (Afrotheria)21056208991570
63.4 %63.4 %
Xenarthran mammals (Xenarthra)765875541040
65.9 %65.9 %
Placental mammals (Boreoeutheria)407343134513598030
2.1 %14.5 %
Laurasiatherian mammals (Laurasiatheria)74405706046643137
4.0 %22.9 %
Cetaceans and Even-toed ungulates (Cetartiodactyla)370403682120316
44.1 %47.5 %
Bovids (Bovidae)16990161838070
76.5 %76.5 %
Carnivores (Carnivora)1637916044194141
28.6 %49.4 %
Caniforms (Caniformia)30601303922090
60.5 %60.5 %
Insectivore mammals (Insectivora)49764948280
71.4 %71.4 %
Bats (Chiroptera)92999287120
54.2 %54.2 %
Primates and Rodents (Euarchontoglires)44109385115215077
1.8 %19.0 %
Rodents and Rabbits (Glires)151361437480682
3.9 %37.4 %
Rodents (Rodentia)137721314876548
5.4 %44.7 %
Squirrels and Old World rodents (Sciurognathi)2092420849723
54.3 %56.6 %
Old World rodents (Murinae)190251785111740
83.5 %83.5 %
Rabbits and Pikas (Lagomorpha)10392102851070
66.4 %66.4 %
Primates (Primates)1786417269166429
8.7 %31.0 %
Dry-nosed primates (Haplorrhini)903989466924
26.8 %36.1 %
Simians (Simiiformes)1893617678992266
30.3 %38.4 %
Apes and Old World monkeys (Catarrhini)23035211541089792
21.6 %37.3 %
Old World monkeys (Cercopithecinae)33187325666210
60.6 %60.6 %
Apes (Hominoidea)1736316746222395
13.4 %37.1 %
Great apes (Hominidae)174311711622887
34.9 %48.2 %
Hominines (Homininae)33319330073120
57.4 %57.4 %
Wet nose lemurs (Strepsirrhini)1006910047220
65.9 %65.9 %
Reptiles and birds (Sauria)1372013148263309
19.0 %41.3 %
Birds and turtles (Archelosauria)126061241012868
27.1 %41.5 %
Birds (Neognathae)1450814052246210
22.7 %42.0 %
Perching birds (Passeriformes)12979128261530
66.7 %66.7 %
Fowls (Galloanserae)12973128687728
36.0 %49.1 %
Turkeys (Phasianidae)12439122971420
69.7 %69.7 %