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Statistics on protein trees

The protein tree pipeline is described at the following page.

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Statistics about the gene-tree nodes

Species# Nodes# speciation nodes# duplication nodes# dubious nodesNode typesAverage duplication confidence scoreAverage duplication confidence score (non-dubious nodes)
Animals and Fungi (Opisthokonta)22162194211
39.4 %41.3 %
Bilateral animals (Bilateria)1194372283814901
44.6 %55.2 %
Arthropods and nematodes (Ecdysozoa)372535961290
64.7 %64.7 %
Chordates (Chordata)957173931780398
32.1 %39.3 %
Ciona sea squirts (Ciona)9368799213760
78.4 %78.4 %
Vertebrates (Vertebrata)1271377114102900
39.6 %48.3 %
Bony vertebrates (Euteleostomi)308021928379763543
25.9 %37.4 %
Lobe-finned fish (Sarcopterygii)16399144716801248
6.9 %19.6 %
Tetrapods (Tetrapoda)1416812965601602
11.7 %23.4 %
Amniotes (Amniota)217171795316902074
8.5 %19.0 %
Reptiles and birds (Sauria)1375713181292284
20.3 %40.1 %
Birds and turtles (Testudines + Archosauria group)126611249911646
28.6 %39.9 %
Birds (Neognathae)275922719232377
36.2 %44.8 %
Turkeys (Phasianidae)12515123621530
65.7 %65.7 %
Perching birds (Passeriformes)13065129211440
70.8 %70.8 %
Mammals (Mammalia)170521404816501354
11.4 %20.7 %
Marsupials and Placental mammals (Theria)195461701014271109
16.8 %29.8 %
Placental mammals (Eutheria)7317147304519520672
3.7 %18.2 %
African mammals (Afrotheria)21289211201690
61.8 %61.8 %
Boreoeutheria400373101213557670
2.2 %14.4 %
Primates and Rodents (Euarchontoglires)44093384885575048
2.0 %20.5 %
Rodents and Rabbits (Glires)153201456773680
3.6 %37.5 %
Rodents (Rodentia)137401315279509
6.1 %45.2 %
Squirrels and Old World rodents (Sciurognathi)2109821027701
60.0 %60.8 %
Old World rodents (Murinae)187791766011190
82.5 %82.5 %
Rabbits and Pikas (Lagomorpha)10462103621000
67.0 %67.0 %
Primates (Primates)1776917209163397
9.5 %32.6 %
Dry-nosed primates (Haplorrhini)907189865629
25.3 %38.4 %
Simians (Simiiformes)1897217723977272
29.6 %37.9 %
Apes and Old World monkeys (Catarrhini)22891210541121716
22.6 %37.0 %
Old World monkeys (Cercopithecinae)33453328545990
61.1 %61.1 %
Apes (Hominoidea)1738216793237352
14.9 %37.1 %
Great apes (Hominidae)175221719123299
33.0 %47.1 %
Hominines (Homininae)33504332003040
59.9 %59.9 %
Wet nose lemurs (Strepsirrhini)1007510051240
66.7 %66.7 %
Laurasiatherian mammals (Laurasiatheria)74273705056753093
4.1 %22.9 %
Insectivore mammals (Insectivora)50605036240
70.8 %70.8 %
Cetaceans and Even-toed ungulates (Cetartiodactyla)372883704522914
45.6 %48.4 %
Bovids (Bovidae)17009162078020
76.1 %76.1 %
Carnivores (Carnivora)1648916163205121
29.5 %46.9 %
Caniforms (Caniformia)30679304652140
61.4 %61.4 %
Bats (Chiroptera)94289417110
54.5 %54.5 %
Xenarthran mammals (Xenarthra)77207624960
64.6 %64.6 %
Marsupials (Marsupialia)29068281039650
65.5 %65.5 %
Ray-finned fishes (Neopterygii)16656150901291275
37.4 %45.3 %
Teleost fishes (Clupeocephala)24268197214075472
51.2 %57.1 %
Teleost fishes (Otophysa)17879171946850
71.9 %71.9 %
Teleost fishes (Acanthomorphata)1907917437683959
20.3 %48.7 %
Teleost fishes (Percomorphaceae)25860209386504272
4.7 %35.7 %
Teleost fishes (Ovalentaria)1808017404267409
22.4 %56.8 %
Silverside fishes (Atherinomorphae)1430914207984
53.9 %56.1 %
Live-bearing aquarium fishes (Poeciliinae)19624189276970
70.4 %70.4 %
Teleost fishes (Percomorpharia)1319613181123
32.2 %40.3 %
Puffers (Tetraodontidae)15494153131810
69.6 %69.6 %