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Statistics on protein trees

The protein tree pipeline is described at the following page.

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Statistics about the gene-tree nodes

Species# Nodes# speciation nodes# duplication nodes# dubious nodesNode typesAverage duplication confidence scoreAverage duplication confidence score (non-dubious nodes)
Animals and Fungi (Opisthokonta)22262195292
43.2 %46.2 %
Bilateral animals (Bilateria)1197172213831919
44.0 %54.6 %
Arthropods and nematodes (Ecdysozoa)375636121440
63.9 %63.9 %
Chordates (Chordata)980673961924486
31.5 %39.5 %
Ciona sea squirts (Ciona)9323796013630
79.0 %79.0 %
Vertebrates (Vertebrata)1275277304157865
38.7 %46.7 %
Bony vertebrates (Euteleostomi)313281946481653699
25.4 %36.8 %
Ray-finned fishes (Neopterygii)16641150341307300
36.4 %44.7 %
Teleost fishes (Clupeocephala)24152196634059430
50.8 %56.2 %
Teleost fishes (Otophysa)17780171106700
71.7 %71.7 %
Teleost fishes (Acanthomorphata)1910617444701961
20.6 %48.9 %
Teleost fishes (Percomorphaceae)26088210226274439
4.4 %35.3 %
Teleost fishes (Ovalentaria)1807117303299469
20.8 %53.5 %
Silverside fishes (Atherinomorphae)142481412910910
51.3 %56.0 %
Live-bearing aquarium fishes (Poeciliinae)19564188736910
70.8 %70.8 %
Teleost fishes (Eupercaria)1303313013191
40.0 %42.1 %
Puffers (Tetraodontidae)15396152201760
69.6 %69.6 %
Lobe-finned fish (Sarcopterygii)16509144586671384
6.1 %18.8 %
Tetrapods (Tetrapoda)1412912886604639
11.6 %23.9 %
Amniotes (Amniota)222211813117662324
7.7 %17.9 %
Mammals (Mammalia)170331407116011361
11.6 %21.4 %
Marsupials and Placental mammals (Theria)197721711214271233
15.7 %29.4 %
Marsupials (Marsupialia)28955279859700
65.7 %65.7 %
Placental mammals (Eutheria)7365147563522720861
3.6 %18.1 %
Boreoeutheria409753153214877956
2.3 %14.5 %
Primates and Rodents (Euarchontoglires)44375386565715148
2.0 %20.3 %
Rodents and Rabbits (Glires)152101444785678
4.1 %36.9 %
Rodents (Rodentia)137571315670531
4.9 %42.0 %
Squirrels and Old World rodents (Sciurognathi)2091220838695
55.5 %59.5 %
Old World rodents (Murinae)187961766611300
83.3 %83.3 %
Rabbits and Pikas (Lagomorpha)1033910244950
66.8 %66.8 %
Primates (Primates)1784017300139401
7.8 %30.3 %
Dry-nosed primates (Haplorrhini)901489444426
26.9 %42.7 %
Simians (Simiiformes)1896417694983287
28.9 %37.4 %
Apes and Old World monkeys (Catarrhini)23051211401113798
21.0 %36.0 %
Old World monkeys (Cercopithecinae)33202325976050
60.7 %60.7 %
Apes (Hominoidea)1735816746237375
14.6 %37.7 %
Great apes (Hominidae)174291709924585
36.0 %48.5 %
Hominines (Homininae)33422331063160
58.2 %58.2 %
Wet nose lemurs (Strepsirrhini)1003610014220
63.6 %63.6 %
Laurasiatherian mammals (Laurasiatheria)74295706386702987
4.3 %23.4 %
Insectivore mammals (Insectivora)49124887250
70.0 %70.0 %
Bats (Chiroptera)93659352130
53.8 %53.8 %
Carnivores (Carnivora)1638216047207128
29.8 %48.2 %
Caniforms (Caniformia)30535303282070
60.7 %60.7 %
Cetaceans and Even-toed ungulates (Cetartiodactyla)371153687722216
44.7 %47.9 %
Bovids (Bovidae)16933161248090
75.5 %75.5 %
African mammals (Afrotheria)21108209571510
65.9 %65.9 %
Xenarthran mammals (Xenarthra)76287534940
66.0 %66.0 %
Reptiles and birds (Sauria)1372213138283301
19.2 %39.7 %
Birds and turtles (Testudines + Archosauria group)126271243711971
25.3 %40.4 %
Birds (Neognathae)1446914058209202
22.3 %43.9 %
Galloanserae13002128799033
37.5 %51.3 %
Turkeys (Phasianidae)12413122681450
68.6 %68.6 %
Perching birds (Passeriformes)12947128111360
71.3 %71.3 %