EnsemblEnsembl Home

Phylogenetic summary of protein families

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Gene QC Validated genes Short genes Long genes Split genes
------------------------------------------------------------------------
-
Caenorhabditis elegans (Caenorhabditis elegans N2)
-------
Fruitfly (Drosophila melanogaster)
-----------------------
-
Cave fish (Astyanax mexicanus)
----------
Zebrafish (Danio rerio)
----------
-
Platyfish (Xiphophorus maculatus)
-------
----
----
Amazon molly (Poecilia formosa)
-------------
--------
Medaka (Oryzias latipes)
-------------
------------
Tilapia (Oreochromis niloticus)
---------------------------------------
-------------
-
Tetraodon (Tetraodon nigroviridis)
-------------
--------
----
Fugu (Takifugu rubripes)
--------------------
Stickleback (Gasterosteus aculeatus)
-----------------------------
Cod (Gadus morhua)
----------------------------------
Spotted gar (Lepisosteus oculatus)
----------
-
Chicken (Gallus gallus)
----------
----
Turkey (Meleagris gallopavo)
----------
--------
Duck (Anas platyrhynchos)
----------
--------
-
Flycatcher (Ficedula albicollis)
--------------------------------------
-------
Zebra Finch (Taeniopygia guttata)
----------------------------
Chinese softshell turtle (Pelodiscus sinensis)
-----------------------------
Anole lizard (Anolis carolinensis)
-------------
Wallaby (Notamacropus eugenii)
-------------------------------------------------
-
Opossum (Monodelphis domestica)
----------------
Tasmanian devil (Sarcophilus harrisii)
------------------------------------------------
-
Sloth (Choloepus hoffmanni)
-------------------
Armadillo (Dasypus novemcinctus)
---------------------------------------
-
Pika (Ochotona princeps)
----------------------
Rabbit (Oryctolagus cuniculus)
----------------------
Algerian mouse (Mus spretus SPRET/EiJ)
----------------------
-
Ryukyu mouse (Mus caroli CAROLI_EIJ)
----------------------
----
Mouse (Mus musculus reference (CL57BL6))
----------------------
--------
Shrew mouse (Mus pahari PAHARI_EIJ)
---------------------------------
Rat (Rattus norvegicus)
-------------------------
-
Chinese hamster CHOK1GS (Cricetulus griseus)
-------------------
----
----
----
Chinese hamster CriGri (Cricetulus griseus)
----------------------------
--------
Golden Hamster (Mesocricetus auratus)
----
----------
-------------
---------------
Northern American deer mouse (Peromyscus maniculatus bairdii)
-------------
------------------------------------
Prairie vole (Microtus ochrogaster)
----------------------------------------------------
Upper Galilee mountains blind mole rat (Nannospalax galili)
----------
--------------------------------------------
Lesser Egyptian jerboa (Jaculus jaculus)
--------------------------------------------
-
Guinea Pig (Cavia porcellus)
-------------------------------------------
Brazilian guinea pig (Cavia aperea)
----------------------------------
-------
-
Naked mole-rat female (Heterocephalus glaber)
------------------------------------------
-
----
Naked mole-rat male (Heterocephalus glaber)
--------------------------------------------
Damara mole rat (Fukomys damarensis)
---------------------------------------------
Long-tailed chinchilla (Chinchilla lanigera)
---------------------------------------------
Degu (Octodon degus)
-------------------------------
------------------------
Squirrel (Ictidomys tridecemlineatus)
---------------------------------------------------------
Kangaroo rat (Dipodomys ordii)
-------------------------------------
Human (Homo sapiens)
-------------------------
----------
-
Gorilla (Gorilla gorilla gorilla)
----------------------------------
----
Chimpanzee (Pan troglodytes)
----------------------------------
--------
Orangutan (Pongo abelii)
----------------------------------
------------
Gibbon (Nomascus leucogenys)
----------------------------------------
Vervet-AGM (Chlorocebus sabaeus)
----------------------------------
------------
-
Macaque (Macaca mulatta)
----------------------------------
-------
Olive baboon (Papio anubis)
-------------------
----------
-----------------------
Marmoset (Callithrix jacchus)
----------------
-------
------------------------------
Tarsier (Carlito syrichta)
------------------------------------------------------
-
Mouse Lemur (Microcebus murinus)
-
-------
-------------------------
Bushbaby (Otolemur garnettii)
--------------------------------------------------------------
Tree Shrew (Tupaia belangeri)
----------------------------------
Panda (Ailuropoda melanoleuca)
----------------------------------
-
Dog (Canis lupus familiaris)
----------------------------------
----
Ferret (Mustela putorius furo)
-----------------------------------------
Cat (Felis catus)
--------------------------------------
-
Hedgehog (Erinaceus europaeus)
-------------------------------------
Shrew (Sorex araneus)
--------------------------------------
-
Microbat (Myotis lucifugus)
----------------
---------------------------------
----
Megabat (Pteropus vampyrus)
-------------------------------
-
Cow (Bos taurus)
-------
-------------------------
Sheep (Ovis aries)
-------------------------
-----
Dolphin (Tursiops truncatus)
--------------------------------
Pig (Sus scrofa)
--------------------------------
Alpaca (Vicugna pacos)
---------------------------------
Horse (Equus caballus)
-------------------------
Elephant (Loxodonta africana)
------------------------------------------------------
-
Lesser hedgehog tenrec (Echinops telfairi)
----------------------
Hyrax (Procavia capensis)
---------------------------------------------------------------
Platypus (Ornithorhynchus anatinus)
--------------------------------------------------------------------
Xenopus (Xenopus tropicalis)
---------------------------------------------------------------------
Coelacanth (Latimeria chalumnae)
--------------------------------------------------------------------------
Lamprey (Petromyzon marinus)
-----------------------------------------------------------------------
-
C.savignyi (Ciona savignyi)
-------
C.intestinalis (Ciona intestinalis)
--------------------------------------------------------------------------------
Saccharomyces cerevisiae (Saccharomyces cerevisiae S288C)