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Statistics on protein trees

The protein tree pipeline is described at the following page.

List of available views:

This is an overview of the various statistics. The phylogenetic tree summarizes all the piecharts found in the other views.

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene events Default genes Species-specific duplications Gene splits
Gene-tree coverage Genes in multi-species trees Orphaned genes Genes in single-species trees
------------------------------------------------------------------------
-
C.elegans
-------
Fruitfly
-------
Wallaby
-------------------------------------------
-
Tasmanian devil
----------
Opossum
------------------
-
Rabbit
-------------
Pika
----------------------
----
-
Rat
----------------
----
Mouse
-------------
--------
Kangaroo rat
--------------------
Squirrel
---------------------
Guinea Pig
---------------------------------
-
Mouse Lemur
----------------
Bushbaby
----------------
Chimpanzee
----------
-------
-
Human
-------------
----
----
Gorilla
-------
-------------
--------
Orangutan
----------------------
------------
Gibbon
----------------------
------------
-
Olive baboon
-------------------
-------
Macaque
--------------------------------------
Marmoset
-------------
---------------------------
Tarsier
-----------------------------------------------
Tree Shrew
-----------------------
-
Microbat
----------------------
Megabat
----------------------
Panda
----------------------
-
Dog
-------------------
----
Ferret
--------------------------
Cat
----
----
------------------------------
-----
-
Hedgehog
----------------
-------
Shrew
----------------------
-
Sheep
-------------------------
Cow
-------------------
-----
Pig
--------------------------
Alpaca
--------------------------
Dolphin
---------------------------
Horse
------------------------------------------------
-
Armadillo
----------
----------
Sloth
----------------------
Tenrec
---------------------------------------------------
-
Hyrax
-------------------
Elephant
------------------------------------------------------------
Platypus
----------------
-
Flycatcher
----------
----------
Zebra Finch
-------------------
-
-
Turkey
-------------------
-------
Chicken
-
-------
---------------------------------------
-----------
Duck
------------------------------
Chinese softshell turtle
-------------------------------
Anole Lizard
--------------------------------------------------------------------
X.tropicalis
---------------------------------------------------------------------
Coelacanth
----------
--------------------
-
Zebrafish
-------------------
Cave fish
-------------------
-
Fugu
----------------
--------
----
Tetraodon
-----------------------------
Stickleback
----------
-------------
----
-
Platyfish
------------------------------------------------
-------------
----
Amazon molly
-------------------
----
--------
Medaka
-------
---------------------
Tilapia
--------------------------------
Cod
-------------------------------------
Spotted gar
--------------------------------------------------------------------------
Lamprey
-----------------------------------------------------------------------
-
C.intestinalis
-------
C.savignyi
--------------------------------------------------------------------------------
S.cerevisiae