EnsemblEnsembl Home

Phylogenetic summary of protein families

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Gene QC Validated genes Short genes Long genes Split genes
--------------------------------------------------------------------
-
C.intestinalis (Ciona intestinalis)
-------
C.savignyi (Ciona savignyi)
-------
-
Amazon molly (Poecilia formosa)
-------
----
Platyfish (Xiphophorus maculatus)
-------
--------
Medaka (Oryzias latipes)
-------
------------
Tilapia (Oreochromis niloticus)
-------------
-
Fugu (Takifugu rubripes)
-------
--------
----
Tetraodon (Tetraodon nigroviridis)
-------
-----------
Stickleback (Gasterosteus aculeatus)
-----------------------------
Cod (Gadus morhua)
---------------------------------------
--------------------
-
Zebrafish (Danio rerio)
-------------
Cave fish (Astyanax mexicanus)
----------------------------------
Spotted gar (Lepisosteus oculatus)
----------
Opossum (Monodelphis domestica)
----------------------------------------------
-
Tasmanian devil (Sarcophilus harrisii)
-------------
Wallaby (Notamacropus eugenii)
-------------
Human (Homo sapiens)
-------------
-
Chimpanzee (Pan troglodytes)
-------------
----
Gorilla (Gorilla gorilla gorilla)
-------------
--------
Orangutan (Pongo abelii)
-------------
------------
Gibbon (Nomascus leucogenys)
-------------------
Olive baboon (Papio anubis)
-------------
------------
-
Vervet-AGM (Chlorocebus sabaeus)
-------------
-------
Macaque (Macaca mulatta)
-------------
-----------------------
Marmoset (Callithrix jacchus)
----
------------------------------------
Tarsier (Carlito syrichta)
---------------------------------------
-
Bushbaby (Otolemur garnettii)
-------------------
Mouse Lemur (Microcebus murinus)
---------------------------
-
Rabbit (Oryctolagus cuniculus)
-------------
----------
Pika (Ochotona princeps)
-------------------
-------------
----
-
Mouse SPRET/EiJ (Mus spretus SPRET/EiJ)
----------------------------
----
Mouse (Mus musculus reference (CL57BL6))
-----------------------------------
Rat (Rattus norvegicus)
-------------------------
---------
Guinea Pig (Cavia porcellus)
---------------------------------
Squirrel (Ictidomys tridecemlineatus)
----------
------------------------
Kangaroo rat (Dipodomys ordii)
----------------------
--------------------------------
Tree Shrew (Tupaia belangeri)
--------------------------------
-
Megabat (Pteropus vampyrus)
-------------------------------
Microbat (Myotis lucifugus)
-------------------------------
Ferret (Mustela putorius furo)
-------------------------------
-
Panda (Ailuropoda melanoleuca)
----------------------------
----
Dog (Canis lupus familiaris)
----------------
--------------------
Cat (Felis catus)
------------------------------------------------
-----
-
Shrew (Sorex araneus)
-------------------------------
Hedgehog (Erinaceus europaeus)
----------------------
-------
-
Cow (Bos taurus)
----
----------------------------
Sheep (Ovis aries)
----------------------------
-----
Dolphin (Tursiops truncatus)
-----------------------------------
Pig (Sus scrofa)
-----------------------------------
Alpaca (Vicugna pacos)
----------
------------------------
Horse (Equus caballus)
----------------
---------------------------------------
-
Armadillo (Dasypus novemcinctus)
----------------------------
Sloth (Choloepus hoffmanni)
----------------------------
Hyrax (Procavia capensis)
---------------------------------------------------------
-
Elephant (Loxodonta africana)
-------------------------
Lesser hedgehog tenrec (Echinops telfairi)
------------------------------------------------------------------
Platypus (Ornithorhynchus anatinus)
-
-------------
-------
-
Chicken (Gallus gallus)
-------------------------
----
Turkey (Meleagris gallopavo)
-------------------------
--------
Duck (Anas platyrhynchos)
-------------------------
--------
-
Zebra Finch (Taeniopygia guttata)
-------------
-----------------------------------
-------
Flycatcher (Ficedula albicollis)
----------------------------------
Chinese softshell turtle (Pelodiscus sinensis)
-----------------------------------
Anole lizard (Anolis carolinensis)
--------------------------------------------------------------------
Xenopus (Xenopus tropicalis)
---------------------------------------------------------------------
Coelacanth (Latimeria chalumnae)
--------------------------------------------------------------------------
Lamprey (Petromyzon marinus)
---------------------------------------------------------------------------
-
Fruitfly (Drosophila melanogaster)
-------
Caenorhabditis elegans (Caenorhabditis elegans N2)
--------------------------------------------------------------------------------
Saccharomyces cerevisiae (Saccharomyces cerevisiae S288C)