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Phylogenetic summary of protein families

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Gene QC Validated genes Short genes Long genes Split genes
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C.savignyi (Ciona savignyi)
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C.intestinalis (Ciona intestinalis)
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-
Chicken (Gallus gallus)
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Turkey (Meleagris gallopavo)
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Duck (Anas platyrhynchos)
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Zebra Finch (Taeniopygia guttata)
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Flycatcher (Ficedula albicollis)
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Chinese softshell turtle (Pelodiscus sinensis)
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Anole lizard (Anolis carolinensis)
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-
Armadillo (Dasypus novemcinctus)
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Sloth (Choloepus hoffmanni)
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-
Rabbit (Oryctolagus cuniculus)
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Pika (Ochotona princeps)
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Mouse (Mus musculus reference (CL57BL6))
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Mouse SPRET/EiJ (Mus spretus SPRETEiJ)
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Rat (Rattus norvegicus)
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Kangaroo rat (Dipodomys ordii)
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Squirrel (Ictidomys tridecemlineatus)
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Guinea Pig (Cavia porcellus)
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Chimpanzee (Pan troglodytes)
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Gorilla (Gorilla gorilla gorilla)
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Human (Homo sapiens)
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Orangutan (Pongo abelii)
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Gibbon (Nomascus leucogenys)
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Macaque (Macaca mulatta)
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Vervet-AGM (Chlorocebus sabaeus)
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Olive baboon (Papio anubis)
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Marmoset (Callithrix jacchus)
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Tarsier (Carlito syrichta)
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-
Mouse Lemur (Microcebus murinus)
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Bushbaby (Otolemur garnettii)
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Tree Shrew (Tupaia belangeri)
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-
Shrew (Sorex araneus)
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Hedgehog (Erinaceus europaeus)
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Panda (Ailuropoda melanoleuca)
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-
Dog (Canis lupus familiaris)
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Ferret (Mustela putorius furo)
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Cat (Felis catus)
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Megabat (Pteropus vampyrus)
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Microbat (Myotis lucifugus)
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-
Cow (Bos taurus)
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Sheep (Ovis aries)
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Alpaca (Vicugna pacos)
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Pig (Sus scrofa)
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Dolphin (Tursiops truncatus)
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Horse (Equus caballus)
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Lesser hedgehog tenrec (Echinops telfairi)
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Hyrax (Procavia capensis)
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Elephant (Loxodonta africana)
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Tasmanian devil (Sarcophilus harrisii)
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-
Opossum (Monodelphis domestica)
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Wallaby (Macropus eugenii)
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Platypus (Ornithorhynchus anatinus)
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Xenopus (Xenopus tropicalis)
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Coelacanth (Latimeria chalumnae)
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-
Platyfish (Xiphophorus maculatus)
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Amazon molly (Poecilia formosa)
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Medaka (Oryzias latipes)
-
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Tilapia (Oreochromis niloticus)
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-
Fugu (Takifugu rubripes)
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Tetraodon (Tetraodon nigroviridis)
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Stickleback (Gasterosteus aculeatus)
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Cod (Gadus morhua)
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Cave fish (Astyanax mexicanus)
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Zebrafish (Danio rerio)
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Spotted gar (Lepisosteus oculatus)
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Lamprey (Petromyzon marinus)
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Fruitfly (Drosophila melanogaster)
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Caenorhabditis elegans (Caenorhabditis elegans N2)
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Saccharomyces cerevisiae (Saccharomyces cerevisiae S288C)