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Phylogenetic summary of protein families

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Gene QC Validated genes Short genes Long genes Split genes
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C.intestinalis (Ciona intestinalis)
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C.savignyi (Ciona savignyi)
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-
Rabbit (Oryctolagus cuniculus)
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Pika (Ochotona princeps)
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Algerian mouse (Mus spretus SPRET/EiJ)
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-
Mouse (Mus musculus reference (CL57BL6))
----------
----
Ryukyu mouse (Mus caroli CAROLI_EIJ)
----------
--------
Shrew mouse (Mus pahari PAHARI_EIJ)
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Rat (Rattus norvegicus)
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-
Chinese hamster CHOK1GS (Cricetulus griseus)
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----
----
----
Chinese hamster CriGri (Cricetulus griseus)
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Golden Hamster (Mesocricetus auratus)
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Prairie vole (Microtus ochrogaster)
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Northern American deer mouse (Peromyscus maniculatus bairdii)
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Upper Galilee mountains blind mole rat (Nannospalax galili)
--------------------------------
Lesser Egyptian jerboa (Jaculus jaculus)
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-
Brazilian guinea pig (Cavia aperea)
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Guinea Pig (Cavia porcellus)
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-------
-
Naked mole-rat female (Heterocephalus glaber)
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-
----
Naked mole-rat male (Heterocephalus glaber)
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Damara mole rat (Fukomys damarensis)
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Degu (Octodon degus)
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Long-tailed chinchilla (Chinchilla lanigera)
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Kangaroo rat (Dipodomys ordii)
---------------------------------
Squirrel (Ictidomys tridecemlineatus)
---------------------------------
-
Bushbaby (Otolemur garnettii)
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Mouse Lemur (Microcebus murinus)
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Chimpanzee (Pan troglodytes)
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-
Human (Homo sapiens)
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----
----
Gorilla (Gorilla gorilla gorilla)
----------------
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Orangutan (Pongo abelii)
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Gibbon (Nomascus leucogenys)
----------------------
Olive baboon (Papio anubis)
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----------
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-
Macaque (Macaca mulatta)
----------------
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Vervet-AGM (Chlorocebus sabaeus)
-----------------------------------
Marmoset (Callithrix jacchus)
------------------------------------
Tarsier (Carlito syrichta)
-----------------------------------------
Tree Shrew (Tupaia belangeri)
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--------------
-
Megabat (Pteropus vampyrus)
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Microbat (Myotis lucifugus)
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Ferret (Mustela putorius furo)
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-
Panda (Ailuropoda melanoleuca)
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Dog (Canis lupus familiaris)
-----------------------
Cat (Felis catus)
----------
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-
Shrew (Sorex araneus)
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Hedgehog (Erinaceus europaeus)
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-
Cow (Bos taurus)
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Sheep (Ovis aries)
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Pig (Sus scrofa)
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Dolphin (Tursiops truncatus)
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Alpaca (Vicugna pacos)
----------
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Horse (Equus caballus)
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-
Sloth (Choloepus hoffmanni)
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Armadillo (Dasypus novemcinctus)
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Hyrax (Procavia capensis)
----------
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-
Lesser hedgehog tenrec (Echinops telfairi)
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Elephant (Loxodonta africana)
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Wallaby (Notamacropus eugenii)
----------------------------------------------------
-
Tasmanian devil (Sarcophilus harrisii)
----------------
Opossum (Monodelphis domestica)
----
-------
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Platypus (Ornithorhynchus anatinus)
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-
Turkey (Meleagris gallopavo)
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----
Chicken (Gallus gallus)
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--------
Duck (Anas platyrhynchos)
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-------
--------
-
Zebra Finch (Taeniopygia guttata)
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Flycatcher (Ficedula albicollis)
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----------------------
Chinese softshell turtle (Pelodiscus sinensis)
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Anole lizard (Anolis carolinensis)
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Xenopus (Xenopus tropicalis)
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Coelacanth (Latimeria chalumnae)
--------------------------------
-
Zebrafish (Danio rerio)
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Cave fish (Astyanax mexicanus)
-
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-
Fugu (Takifugu rubripes)
-------------------
--------
----
Tetraodon (Tetraodon nigroviridis)
--------------------------------
Stickleback (Gasterosteus aculeatus)
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----
-
Platyfish (Xiphophorus maculatus)
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------------------------------------
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Amazon molly (Poecilia formosa)
----------------
----
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Medaka (Oryzias latipes)
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Tilapia (Oreochromis niloticus)
--------------------------------
Cod (Gadus morhua)
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Spotted gar (Lepisosteus oculatus)
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Lamprey (Petromyzon marinus)
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Caenorhabditis elegans (Caenorhabditis elegans N2)
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Fruitfly (Drosophila melanogaster)
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Saccharomyces cerevisiae (Saccharomyces cerevisiae S288C)