Phylogenetic summary of protein families
This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:- Overview
- Gene tree coverage and Gene QC for each species
- Size of gene trees (split by their root taxon)
- Gene tree nodes, and the inference of speciation / duplication events
Gene tree coverage and Gene QC (per species)
Quick links: Primates, Rodents etc., Laurasiatheria, Afrotheria, Xenarthra, Other mammals, Birds, Reptiles, Amphibians, Fish, Other vertebrates, Other chordates, Other eukaryotes
Favourite species
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human (Homo sapiens) | 19863 | 19690 | 173 | 2 | 19688 | 469 | 2 | 76 | 97 | ||
| Mouse (Mus musculus reference (CL57BL6) strain) | 22100 | 22045 | 55 | 2 | 22043 | 1065 | 9 | 66 | 92 | ||
| Zebrafish (Danio rerio) | 25558 | 24945 | 613 | 175 | 24770 | 3254 | 157 | 716 | 165 |
Primates
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Vervet-AGM (Chlorocebus sabaeus) | 19165 | 18957 | 208 | 2 | 18955 | 164 | 106 | 284 | 84 | ||
| Black snub-nosed monkey (Rhinopithecus bieti) | 20966 | 20913 | 53 | 2 | 20911 | 188 | 37 | 594 | 77 | ||
| Bolivian squirrel monkey (Saimiri boliviensis boliviensis) | 19380 | 19348 | 32 | 0 | 19348 | 416 | 9 | 360 | 70 | ||
| Bonobo (Pan paniscus) | 21210 | 21173 | 37 | 0 | 21173 | 82 | 49 | 410 | 92 | ||
| Chimpanzee (Pan troglodytes) | 23534 | 23500 | 34 | 14 | 23486 | 1308 | 19 | 405 | 107 | ||
| Coquerel's sifaka (Propithecus coquereli) | 17925 | 17888 | 37 | 0 | 17888 | 432 | 58 | 513 | 50 | ||
| Crab-eating macaque (Macaca fascicularis) | 22504 | 22223 | 281 | 630 | 21593 | 1095 | 59 | 572 | 216 | ||
| Drill (Mandrillus leucophaeus) | 20841 | 20771 | 70 | 2 | 20769 | 102 | 38 | 507 | 84 | ||
| Golden snub-nosed monkey (Rhinopithecus roxellana) | 21289 | 21249 | 40 | 0 | 21249 | 287 | 22 | 549 | 88 | ||
| Mouse Lemur (Microcebus murinus) | 18895 | 18856 | 39 | 0 | 18856 | 932 | 33 | 345 | 54 | ||
| Greater bamboo lemur (Prolemur simus) | 20354 | 20134 | 220 | 38 | 20096 | 785 | 76 | 603 | 60 | ||
| Human (Homo sapiens) | 19863 | 19690 | 173 | 2 | 19688 | 469 | 2 | 76 | 97 | ||
| Ma's night monkey (Aotus nancymaae) | 20412 | 20359 | 53 | 0 | 20359 | 619 | 49 | 442 | 57 | ||
| Macaque (Macaca mulatta) | 21761 | 21683 | 78 | 0 | 21683 | 815 | 11 | 270 | 201 | ||
| Gibbon (Nomascus leucogenys) | 20794 | 20691 | 103 | 2 | 20689 | 369 | 30 | 496 | 98 | ||
| Olive baboon (Papio anubis) | 21882 | 21809 | 73 | 7 | 21802 | 1316 | 26 | 552 | 150 | ||
| Panamanian white-faced capuchin (Cebus imitator) | 20317 | 20277 | 40 | 0 | 20277 | 592 | 25 | 384 | 70 | ||
| Tarsier (Carlito syrichta) | 18398 | 18347 | 51 | 0 | 18347 | 1028 | 52 | 924 | 41 | ||
| Pig-tailed macaque (Macaca nemestrina) | 21060 | 21001 | 59 | 0 | 21001 | 101 | 23 | 279 | 83 | ||
| Bushbaby (Otolemur garnettii) | 19506 | 19416 | 90 | 5 | 19411 | 1132 | 139 | 311 | 54 | ||
| Sooty mangabey (Cercocebus atys) | 20926 | 20883 | 43 | 0 | 20883 | 97 | 19 | 274 | 84 | ||
| Sumatran orangutan (Pongo abelii) | 20211 | 20129 | 82 | 2 | 20127 | 402 | 12 | 250 | 145 | ||
| Gorilla (Gorilla gorilla gorilla) | 21794 | 21728 | 66 | 0 | 21728 | 386 | 44 | 506 | 97 | ||
| White-tufted-ear marmoset (Callithrix jacchus) | 22078 | 21983 | 95 | 26 | 21957 | 2649 | 14 | 312 | 176 |
Rodents etc.
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Alpine marmot (Marmota marmota marmota) | 20389 | 20196 | 193 | 9 | 20187 | 656 | 175 | 806 | 46 | ||
| Pika (Ochotona princeps) | 16006 | 15694 | 312 | 36 | 15658 | 514 | 70 | 355 | 45 | ||
| Arctic ground squirrel (Urocitellus parryii) | 19674 | 19528 | 146 | 4 | 19524 | 231 | 101 | 465 | 83 | ||
| Chinese hamster PICR (Cricetulus griseus strain 17A/GY) | 24185 | 23890 | 295 | 502 | 23388 | 3184 | 59 | 489 | 224 | ||
| Degu (Octodon degus) | 19982 | 19915 | 67 | 5 | 19910 | 2426 | 248 | 1118 | 19 | ||
| Guinea Pig (Cavia porcellus) | 18095 | 18048 | 47 | 13 | 18035 | 828 | 74 | 381 | 31 | ||
| Eurasian red squirrel (Sciurus vulgaris) | 22420 | 22211 | 209 | 37 | 22174 | 2176 | 112 | 735 | 59 | ||
| Golden Hamster (Mesocricetus auratus) | 18257 | 18136 | 121 | 0 | 18136 | 340 | 247 | 1068 | 43 | ||
| Lesser Egyptian jerboa (Jaculus jaculus) | 17845 | 17771 | 74 | 0 | 17771 | 1087 | 225 | 970 | 28 | ||
| Long-tailed chinchilla (Chinchilla lanigera) | 17809 | 17765 | 44 | 6 | 17759 | 372 | 48 | 328 | 44 | ||
| Mouse (Mus musculus reference (CL57BL6) strain) | 22100 | 22045 | 55 | 2 | 22043 | 1065 | 9 | 66 | 92 | ||
| Naked mole-rat female (Heterocephalus glaber reference strain) | 23216 | 22847 | 369 | 171 | 22676 | 3056 | 222 | 1459 | 164 | ||
| Northern American deer mouse (Peromyscus maniculatus bairdii) | 21687 | 21468 | 219 | 13 | 21455 | 1485 | 91 | 471 | 49 | ||
| Tree Shrew (Tupaia belangeri) | 15471 | 15084 | 387 | 63 | 15021 | 791 | 52 | 396 | 47 | ||
| Norway rat - BN/NHsdMcwi (Rattus norvegicus reference strain) | 22548 | 22379 | 169 | 18 | 22361 | 2539 | 15 | 107 | 198 | ||
| Kangaroo rat (Dipodomys ordii) | 16911 | 16816 | 95 | 6 | 16810 | 490 | 244 | 1038 | 28 | ||
| Rabbit (Oryctolagus cuniculus) | 20612 | 20323 | 289 | 30 | 20293 | 2433 | 139 | 662 | 234 | ||
| Ryukyu mouse (Mus caroli strain CAROLI_EIJ) | 19795 | 19623 | 172 | 0 | 19623 | 362 | 8 | 298 | 67 | ||
| Shrew mouse (Mus pahari strain PAHARI_EIJ) | 19611 | 19434 | 177 | 2 | 19432 | 432 | 8 | 303 | 62 | ||
| Steppe mouse (Mus spicilegus) | 22924 | 22431 | 493 | 33 | 22398 | 856 | 34 | 534 | 108 | ||
| Squirrel (Ictidomys tridecemlineatus) | 18474 | 18425 | 49 | 3 | 18422 | 324 | 71 | 382 | 41 | ||
| Upper Galilee mountains blind mole rat (Nannospalax galili) | 18647 | 18530 | 117 | 0 | 18530 | 737 | 250 | 907 | 45 | ||
| Prairie vole (Microtus ochrogaster) | 19130 | 19032 | 98 | 5 | 19027 | 808 | 189 | 693 | 42 | ||
| Western wild mouse (Mus spretus reference strain) | 22236 | 21897 | 339 | 41 | 21856 | 582 | 111 | 272 | 83 |
Laurasiatheria
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Alpaca (Vicugna pacos) | 11765 | 11630 | 135 | 10 | 11620 | 179 | 45 | 297 | 23 | ||
| American bison (Bison bison bison) | 20241 | 20143 | 98 | 4 | 20139 | 179 | 193 | 916 | 47 | ||
| American black bear (Ursus americanus) | 20568 | 20434 | 134 | 3 | 20431 | 510 | 344 | 1827 | 69 | ||
| American mink (Neogale vison) | 19619 | 19467 | 152 | 0 | 19467 | 274 | 136 | 564 | 68 | ||
| Arabian camel (Camelus dromedarius) | 19406 | 19237 | 169 | 6 | 19231 | 455 | 148 | 464 | 112 | ||
| Donkey (Equus asinus reference breed) | 21419 | 21266 | 153 | 15 | 21251 | 588 | 175 | 414 | 236 | ||
| Beluga whale (Delphinapterus leucas) | 19091 | 19044 | 47 | 0 | 19044 | 174 | 158 | 634 | 108 | ||
| Blue whale (Balaenoptera musculus) | 19518 | 19442 | 76 | 4 | 19438 | 420 | 129 | 573 | 66 | ||
| Dolphin (Tursiops truncatus) | 16550 | 16382 | 168 | 6 | 16376 | 78 | 57 | 212 | 47 | ||
| Cattle (Bos taurus reference breed) | 20848 | 20779 | 69 | 130 | 20649 | 750 | 18 | 84 | 170 | ||
| Chacoan peccary (Catagonus wagneri) | 19627 | 19498 | 129 | 29 | 19469 | 628 | 90 | 347 | 54 | ||
| Dingo (Canis lupus dingo) | 21360 | 21252 | 108 | 2 | 21250 | 530 | 424 | 965 | 86 | ||
| Dog (Canis lupus familiaris reference breed) | 20567 | 20494 | 73 | 4 | 20490 | 341 | 40 | 326 | 317 | ||
| Domestic cat (Felis catus reference breed) | 19209 | 19102 | 107 | 185 | 18917 | 733 | 26 | 225 | 296 | ||
| Ferret (Mustela putorius furo) | 19910 | 18472 | 1438 | 20 | 18452 | 352 | 173 | 436 | 71 | ||
| Domestic yak (Bos grunniens) | 20967 | 20888 | 79 | 0 | 20888 | 467 | 103 | 456 | 188 | ||
| Shrew (Sorex araneus) | 13187 | 12873 | 314 | 24 | 12849 | 864 | 31 | 397 | 45 | ||
| Giant panda (Ailuropoda melanoleuca reference isolate) | 20857 | 20746 | 111 | 6 | 20740 | 652 | 62 | 490 | 161 | ||
| Goat (Capra hircus reference breed) | 21361 | 21310 | 51 | 7 | 21303 | 980 | 107 | 424 | 57 | ||
| Greater horseshoe bat (Rhinolophus ferrumequinum) | 19533 | 19369 | 164 | 12 | 19357 | 832 | 65 | 305 | 120 | ||
| Horse (Equus caballus breed thoroughbred) | 21468 | 21350 | 118 | 78 | 21272 | 1417 | 92 | 313 | 305 | ||
| Hybrid - Bos Indicus (Bos indicus x Bos taurus) | 22256 | 22173 | 83 | 2 | 22171 | 649 | 49 | 301 | 245 | ||
| Megabat (Pteropus vampyrus) | 16990 | 16810 | 180 | 18 | 16792 | 237 | 72 | 240 | 45 | ||
| Leopard (Panthera pardus) | 19688 | 19618 | 70 | 2 | 19616 | 234 | 104 | 478 | 36 | ||
| Lion (Panthera leo) | 19550 | 19457 | 93 | 0 | 19457 | 167 | 77 | 331 | 94 | ||
| Microbat (Myotis lucifugus) | 19728 | 19576 | 152 | 16 | 19560 | 2579 | 154 | 719 | 47 | ||
| Narwhal (Monodon monoceros) | 19168 | 19120 | 48 | 11 | 19109 | 184 | 93 | 401 | 82 | ||
| Pig (Sus scrofa reference breed) | 22041 | 21878 | 163 | 202 | 21676 | 2293 | 74 | 274 | 109 | ||
| Polar bear (Ursus maritimus) | 18724 | 18616 | 108 | 0 | 18616 | 144 | 309 | 964 | 81 | ||
| Red fox (Vulpes vulpes) | 20305 | 20183 | 122 | 0 | 20183 | 462 | 209 | 664 | 181 | ||
| Sheep (Ovis aries reference breed) | 19878 | 19845 | 33 | 10 | 19835 | 585 | 12 | 63 | 128 | ||
| Siberian musk deer (Moschus moschiferus) | 21352 | 21169 | 183 | 15 | 21154 | 1018 | 66 | 460 | 82 | ||
| Sperm whale (Physeter macrocephalus) | 19717 | 19599 | 118 | 11 | 19588 | 492 | 82 | 842 | 63 | ||
| Tiger (Panthera tigris altaica) | 17544 | 17504 | 40 | 0 | 17504 | 55 | 183 | 724 | 31 | ||
| Vaquita (Phocoena sinus) | 18962 | 18902 | 60 | 0 | 18902 | 232 | 86 | 393 | 75 | ||
| Hedgehog (Erinaceus europaeus) | 14601 | 14270 | 331 | 22 | 14248 | 557 | 26 | 379 | 39 | ||
| Wild yak (Bos mutus) | 20847 | 20744 | 103 | 2 | 20742 | 279 | 166 | 809 | 88 | ||
| Yarkand deer (Cervus hanglu yarkandensis) | 22020 | 21915 | 105 | 14 | 21901 | 1455 | 63 | 430 | 175 |
Afrotheria
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Elephant (Loxodonta africana) | 20033 | 19888 | 145 | 4 | 19884 | 1969 | 318 | 642 | 48 | ||
| Hyrax (Procavia capensis) | 16057 | 15757 | 300 | 10 | 15747 | 314 | 30 | 274 | 59 | ||
| Lesser hedgehog tenrec (Echinops telfairi) | 16575 | 15980 | 595 | 136 | 15844 | 1061 | 38 | 493 | 59 |
Xenarthra
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Sloth (Choloepus hoffmanni) | 12393 | 12155 | 238 | 28 | 12127 | 532 | 14 | 334 | 30 | ||
| Armadillo (Dasypus novemcinctus) | 22711 | 22328 | 383 | 105 | 22223 | 3337 | 167 | 795 | 151 |
Other mammals
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Common wombat (Vombatus ursinus) | 21201 | 21071 | 130 | 26 | 21045 | 2378 | 187 | 718 | 67 | ||
| Opossum (Monodelphis domestica) | 21384 | 21232 | 152 | 13 | 21219 | 2983 | 204 | 777 | 159 | ||
| Koala (Phascolarctos cinereus) | 19833 | 19654 | 179 | 6 | 19648 | 850 | 216 | 678 | 162 | ||
| Platypus (Ornithorhynchus anatinus) | 17418 | 17269 | 149 | 14 | 17255 | 1165 | 109 | 484 | 301 | ||
| Wallaby (Notamacropus eugenii) | 15290 | 15056 | 234 | 8 | 15048 | 432 | 12 | 295 | 45 | ||
| Tasmanian devil (Sarcophilus harrisii) | 19213 | 19025 | 188 | 11 | 19014 | 1182 | 74 | 338 | 200 |
Birds
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| African ostrich (Struthio camelus australis) | 14297 | 14015 | 282 | 5 | 14010 | 149 | 147 | 698 | 69 | ||
| Chicken (Gallus gallus reference breed) | 17007 | 16813 | 194 | 95 | 16718 | 1188 | 65 | 275 | 225 | ||
| Collared flycatcher (Ficedula albicollis) | 15457 | 15151 | 306 | 8 | 15143 | 286 | 136 | 637 | 260 | ||
| Common canary (Serinus canaria) | 15225 | 14888 | 337 | 41 | 14847 | 336 | 185 | 702 | 88 | ||
| Duck (Anas platyrhynchos platyrhynchos) | 16618 | 16273 | 345 | 22 | 16251 | 818 | 336 | 1207 | 213 | ||
| Golden eagle (Aquila chrysaetos chrysaetos) | 16118 | 15885 | 233 | 9 | 15876 | 314 | 193 | 490 | 119 | ||
| Great Tit (Parus major) | 15003 | 14747 | 256 | 4 | 14743 | 64 | 105 | 391 | 219 | ||
| Japanese quail (Coturnix japonica) | 15732 | 15472 | 260 | 8 | 15464 | 202 | 118 | 467 | 146 | ||
| Kakapo (Strigops habroptila) | 16037 | 15824 | 213 | 6 | 15818 | 423 | 303 | 701 | 84 | ||
| Medium ground-finch (Geospiza fortis) | 14187 | 13964 | 223 | 2 | 13962 | 82 | 191 | 715 | 63 | ||
| Pink-footed goose (Anser brachyrhynchus) | 15545 | 15304 | 241 | 3 | 15301 | 158 | 106 | 441 | 177 | ||
| Turkey (Meleagris gallopavo reference strain) | 16226 | 15897 | 329 | 46 | 15851 | 500 | 458 | 1606 | 122 | ||
| Zebra finch (Taeniopygia guttata) | 16619 | 16345 | 274 | 20 | 16325 | 992 | 68 | 333 | 420 |
Reptiles
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Abingdon island giant tortoise (Chelonoidis abingdonii) | 20204 | 19789 | 415 | 18 | 19771 | 470 | 552 | 1586 | 52 | ||
| Argentine black and white tegu (Salvator merianae) | 19342 | 18878 | 464 | 120 | 18758 | 1223 | 149 | 467 | 106 | ||
| Australian saltwater crocodile (Crocodylus porosus) | 15226 | 14873 | 353 | 69 | 14804 | 262 | 167 | 550 | 119 | ||
| Blue-ringed sea krait (Laticauda laticaudata) | 17627 | 17305 | 322 | 2 | 17303 | 268 | 94 | 2109 | 69 | ||
| Chinese softshell turtle (Pelodiscus sinensis) | 18189 | 17906 | 283 | 21 | 17885 | 1816 | 315 | 925 | 45 | ||
| Common wall lizard (Podarcis muralis) | 22062 | 21695 | 367 | 126 | 21569 | 3577 | 179 | 724 | 188 | ||
| Eastern brown snake (Pseudonaja textilis) | 18400 | 18177 | 223 | 24 | 18153 | 807 | 372 | 1258 | 45 | ||
| Goodes thornscrub tortoise (Gopherus evgoodei) | 19808 | 19595 | 213 | 65 | 19530 | 751 | 370 | 949 | 88 | ||
| Green anole (Anolis carolinensis reference strain) | 21555 | 21227 | 328 | 195 | 21032 | 4410 | 166 | 913 | 108 | ||
| Indian cobra (Naja naja) | 18011 | 17756 | 255 | 47 | 17709 | 653 | 461 | 1240 | 66 | ||
| Mainland tiger snake (Notechis scutatus) | 18969 | 18693 | 276 | 26 | 18667 | 947 | 654 | 1922 | 35 | ||
| Three-toed box turtle (Terrapene triunguis) | 22095 | 21827 | 268 | 109 | 21718 | 2439 | 396 | 1396 | 77 | ||
| Tuatara (Sphenodon punctatus) | 17648 | 17371 | 277 | 4 | 17367 | 691 | 1185 | 1979 | 32 | ||
| Painted turtle (Chrysemys picta bellii) | 21186 | 20843 | 343 | 30 | 20813 | 1027 | 232 | 860 | 116 |
Amphibians
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Leishan spiny toad (Leptobrachium leishanense) | 29203 | 28767 | 436 | 581 | 28186 | 10558 | 92 | 556 | 243 | ||
| Tropical clawed frog (Xenopus tropicalis) | 22107 | 21795 | 312 | 245 | 21550 | 4212 | 52 | 253 | 249 |
Fish
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Amazon molly (Poecilia formosa) | 23615 | 23401 | 214 | 35 | 23366 | 1129 | 100 | 511 | 104 | ||
| Asian bonytongue (Scleropages formosus) | 24115 | 23751 | 364 | 48 | 23703 | 2141 | 89 | 489 | 147 | ||
| Atlantic cod (Gadus morhua) | 23515 | 23188 | 327 | 245 | 22943 | 3190 | 70 | 536 | 195 | ||
| Atlantic herring (Clupea harengus reference strain) | 26866 | 26508 | 358 | 165 | 26343 | 4171 | 106 | 680 | 210 | ||
| Atlantic salmon (Salmo salar) | 47205 | 46865 | 340 | 104 | 46761 | 4928 | 234 | 953 | 471 | ||
| Ballan wrasse (Labrus bergylta) | 27393 | 27077 | 316 | 165 | 26912 | 4639 | 354 | 1527 | 132 | ||
| Barramundi perch (Lates calcarifer) | 25109 | 24896 | 213 | 43 | 24853 | 2527 | 281 | 923 | 114 | ||
| Bicolor damselfish (Stegastes partitus) | 23089 | 22811 | 278 | 8 | 22803 | 685 | 345 | 1143 | 112 | ||
| Brown trout (Salmo trutta) | 43935 | 43654 | 281 | 47 | 43607 | 3185 | 188 | 1034 | 424 | ||
| Burton's mouthbrooder (Haplochromis burtoni) | 23079 | 22990 | 89 | 2 | 22988 | 96 | 269 | 836 | 120 | ||
| Channel bull blenny (Cottoperca gobio) | 21662 | 21385 | 277 | 81 | 21304 | 1265 | 195 | 708 | 111 | ||
| Channel catfish (Ictalurus punctatus strain USDA103-YYmale1) | 29209 | 28815 | 394 | 520 | 28295 | 7575 | 166 | 1141 | 223 | ||
| Chinese medaka (Oryzias sinensis) | 21964 | 21659 | 305 | 22 | 21637 | 970 | 76 | 1480 | 102 | ||
| Chinook salmon (Oncorhynchus tshawytscha reference strain) | 42567 | 42201 | 366 | 47 | 42154 | 1822 | 232 | 1023 | 375 | ||
| Climbing perch (Anabas testudineus reference strain) | 23996 | 23813 | 183 | 40 | 23773 | 2143 | 108 | 391 | 135 | ||
| Clown anemonefish (Amphiprion ocellaris ecotype Okinawa) | 22859 | 22748 | 111 | 10 | 22738 | 526 | 37 | 314 | 187 | ||
| Coho salmon (Oncorhynchus kisutch) | 43940 | 43622 | 318 | 47 | 43575 | 3745 | 120 | 917 | 542 | ||
| Common carp (Cyprinus carpio carpio) | 44807 | 44489 | 318 | 132 | 44357 | 4741 | 153 | 585 | 419 | ||
| Denticle herring (Denticeps clupeoides reference strain) | 23880 | 23541 | 339 | 149 | 23392 | 3016 | 93 | 596 | 125 | ||
| Eastern happy (Astatotilapia calliptera reference strain) | 25714 | 25634 | 80 | 12 | 25622 | 1206 | 95 | 395 | 201 | ||
| Electric eel (Electrophorus electricus reference strain) | 22764 | 22362 | 402 | 101 | 22261 | 1371 | 299 | 914 | 79 | ||
| European seabass (Dicentrarchus labrax) | 23006 | 22844 | 162 | 23 | 22821 | 1783 | 28 | 248 | 233 | ||
| Fugu (Takifugu rubripes) | 21411 | 21101 | 310 | 76 | 21025 | 2006 | 80 | 524 | 157 | ||
| Gilthead seabream (Sparus aurata) | 25222 | 25024 | 198 | 76 | 24948 | 2828 | 70 | 405 | 195 | ||
| Goldfish (Carassius auratus) | 54774 | 54376 | 398 | 289 | 54087 | 14360 | 144 | 1425 | 385 | ||
| Greater amberjack (Seriola dumerili) | 23278 | 23063 | 215 | 14 | 23049 | 481 | 253 | 565 | 115 | ||
| Guppy (Poecilia reticulata) | 22871 | 22656 | 215 | 2 | 22654 | 399 | 413 | 1050 | 118 | ||
| Huchen (Hucho hucho) | 50114 | 48484 | 1630 | 222 | 48262 | 5810 | 1737 | 5924 | 248 | ||
| Indian medaka (Oryzias melastigma) | 23543 | 23279 | 264 | 17 | 23262 | 1132 | 502 | 1100 | 133 | ||
| Japanese medaka HdrR (Oryzias latipes) | 23622 | 23415 | 207 | 37 | 23378 | 1504 | 361 | 742 | 152 | ||
| Javanese ricefish (Oryzias javanicus) | 21504 | 21295 | 209 | 26 | 21269 | 911 | 114 | 601 | 109 | ||
| Large yellow croaker (Larimichthys crocea) | 22929 | 22618 | 311 | 10 | 22608 | 971 | 82 | 405 | 188 | ||
| Lumpfish (Cyclopterus lumpus) | 21513 | 21299 | 214 | 26 | 21273 | 798 | 305 | 859 | 95 | ||
| Lyretail cichlid (Neolamprologus brichardi) | 23596 | 23357 | 239 | 12 | 23345 | 361 | 572 | 1781 | 83 | ||
| Makobe Island cichlid (Pundamilia nyererei) | 23501 | 23391 | 110 | 2 | 23389 | 157 | 386 | 1113 | 92 | ||
| Mangrove rivulus (Kryptolebias marmoratus) | 21930 | 21752 | 178 | 15 | 21737 | 904 | 176 | 737 | 118 | ||
| Mexican tetra (Astyanax mexicanus) | 26698 | 26291 | 407 | 103 | 26188 | 2968 | 290 | 890 | 175 | ||
| Midas cichlid (Amphilophus citrinellus) | 23696 | 23406 | 290 | 30 | 23376 | 995 | 445 | 1369 | 55 | ||
| Monterrey platyfish (Xiphophorus couchianus) | 20569 | 20315 | 254 | 9 | 20306 | 188 | 622 | 2234 | 36 | ||
| Mummichog (Fundulus heteroclitus) | 23069 | 22754 | 315 | 15 | 22739 | 812 | 433 | 1261 | 107 | ||
| Nile tilapia (Oreochromis niloticus) | 28189 | 28019 | 170 | 24 | 27995 | 3498 | 77 | 461 | 219 | ||
| Northern pike (Esox lucius reference strain) | 25575 | 25295 | 280 | 72 | 25223 | 2327 | 47 | 234 | 249 | ||
| Orange clownfish (Amphiprion percula) | 23926 | 23726 | 200 | 20 | 23706 | 821 | 350 | 870 | 108 | ||
| Paramormyrops kingsleyae (Paramormyrops kingsleyae) | 24792 | 24270 | 522 | 69 | 24201 | 1656 | 273 | 890 | 144 | ||
| Pike-perch (Sander lucioperca) | 24521 | 24295 | 226 | 126 | 24169 | 2481 | 192 | 730 | 120 | ||
| Pinecone soldierfish (Myripristis murdjan) | 24028 | 23738 | 290 | 89 | 23649 | 2011 | 349 | 916 | 99 | ||
| Rainbow trout (Oncorhynchus mykiss) | 48326 | 47978 | 348 | 119 | 47859 | 7152 | 157 | 766 | 517 | ||
| Red-bellied piranha (Pygocentrus nattereri reference strain) | 25729 | 25469 | 260 | 75 | 25394 | 2610 | 60 | 377 | 216 | ||
| Reedfish (Erpetoichthys calabaricus) | 22329 | 21942 | 387 | 276 | 21666 | 4011 | 202 | 780 | 108 | ||
| Sailfin molly (Poecilia latipinna) | 23640 | 23449 | 191 | 10 | 23439 | 822 | 327 | 1494 | 88 | ||
| Sheepshead minnow (Cyprinodon variegatus) | 23019 | 22786 | 233 | 35 | 22751 | 1147 | 438 | 1241 | 101 | ||
| Siamese fighting fish (Betta splendens) | 22388 | 22143 | 245 | 116 | 22027 | 1946 | 64 | 406 | 136 | ||
| Platyfish (Xiphophorus maculatus) | 23774 | 23642 | 132 | 28 | 23614 | 1117 | 307 | 646 | 149 | ||
| Spiny chromis (Acanthochromis polyacanthus) | 24027 | 23808 | 219 | 41 | 23767 | 1169 | 286 | 1410 | 96 | ||
| Spotted gar (Lepisosteus oculatus) | 18341 | 18104 | 237 | 25 | 18079 | 998 | 119 | 569 | 107 | ||
| Tetraodon (Tetraodon nigroviridis) | 19602 | 19317 | 285 | 61 | 19256 | 1189 | 390 | 1942 | 69 | ||
| Stickleback (Gasterosteus aculeatus aculeatus reference strain) | 22376 | 22233 | 143 | 54 | 22179 | 2108 | 78 | 409 | 242 | ||
| Tiger tail seahorse (Hippocampus comes) | 20852 | 20501 | 351 | 68 | 20433 | 938 | 555 | 1432 | 79 | ||
| Tongue sole (Cynoglossus semilaevis) | 21372 | 21077 | 295 | 17 | 21060 | 861 | 332 | 1008 | 116 | ||
| Turbot (Scophthalmus maximus) | 21263 | 21018 | 245 | 22 | 20996 | 525 | 95 | 401 | 167 | ||
| Turquoise killifish (Nothobranchius furzeri) | 23428 | 23203 | 225 | 102 | 23101 | 3132 | 95 | 665 | 137 | ||
| Yellowtail amberjack (Seriola lalandi dorsalis) | 24755 | 24451 | 304 | 34 | 24417 | 1026 | 311 | 1272 | 132 | ||
| Zebra mbuna (Maylandia zebra) | 27187 | 27059 | 128 | 15 | 27044 | 1600 | 284 | 908 | 148 | ||
| Zebrafish (Danio rerio) | 25558 | 24945 | 613 | 175 | 24770 | 3254 | 157 | 716 | 165 | ||
| Zig-zag eel (Mastacembelus armatus) | 22364 | 22192 | 172 | 30 | 22162 | 1493 | 126 | 471 | 121 |
Other vertebrates
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Coelacanth (Latimeria chalumnae) | 19569 | 19402 | 167 | 410 | 18992 | 2284 | 345 | 862 | 57 | ||
| Elephant shark (Callorhinchus milii) | 19415 | 18367 | 1048 | 487 | 17880 | 1640 | 409 | 1318 | 89 | ||
| Hagfish (Eptatretus burgeri) | 16513 | 14679 | 1834 | 425 | 14254 | 2179 | 388 | 1684 | 123 | ||
| Lamprey (Petromyzon marinus) | 10415 | 9993 | 422 | 209 | 9784 | 1237 | 85 | 2465 | 21 |
Other chordates
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Ciona intestinalis | 16671 | 12053 | 4618 | 400 | 11653 | 1440 | 372 | 1923 | 165 | ||
| Ciona savignyi | 11616 | 9573 | 2043 | 221 | 9352 | 837 | 309 | 1457 | 132 |
Other eukaryotes
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Saccharomyces cerevisiae (Saccharomyces cerevisiae S288C) | 6600 | 3726 | 2874 | 926 | 2800 | 973 | 10 | 165 | 195 | ||
| Drosophila melanogaster - (Fruit fly) (Drosophila melanogaster) | 13943 | 10125 | 3818 | 2222 | 7903 | 3156 | 0 | 254 | 596 | ||
| Caenorhabditis elegans (Nematode, N2) (Caenorhabditis elegans strain N2) | 19985 | 13363 | 6622 | 6745 | 6618 | 6452 | 8 | 604 | 412 |