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Statistics on protein trees

The protein tree pipeline is described at the following page.

List of available views:

Gene-tree coverage (per species)

Quick links: Primates, Rodents etc., Laurasiatheria, Afrotheria, Xenarthra, Other mammals, Birds & Reptiles, Amphibians, Fish, Other vertebrates, Other chordates, Other eukaryotes

Favourite species

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Human (Homo sapiens)202809354319951329519946
6826
Mouse (Mus musculus)22338534422170063820621494
24395
Zebrafish (Danio rerio)26459431532580165852125280
4863131

Primates

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Bushbaby (Otolemur garnettii)19506199861941888819410
121857
Chimpanzee (Pan troglodytes)1875919907185312281618515
22318
Gibbon (Nomascus leucogenys)185751998818389186018389
205140
Gorilla (Gorilla gorilla gorilla)2096227473203835792920354
49742
Human (Homo sapiens)202809354319951329519946
6826
Macaque (Macaca mulatta)2190536384214884176421424
957289
Marmoset (Callithrix jacchus)2097843771206443341520629
142386
Mouse Lemur (Microcebus murinus)1631916319160642552416040
42934
Olive baboon (Papio anubis)19210209771913575019135
23432
Orangutan (Pongo abelii)2042421414198305944619784
43554
Tarsier (Tarsius syrichta)1362813675134102183613374
4769
Vervet/AGM (Chlorocebus sabaeus)191651925519064101019064
18160

Rodents etc.

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Guinea Pig (Cavia porcellus)186731977418462211418458
138762
Kangaroo rat (Dipodomys ordii)1579815853155702281715553
47023
Mouse (Mus musculus)22338534422170063820621494
24395
Pika (Ochotona princeps)1600616006157572492415733
56228
Rabbit (Oryctolagus cuniculus)1929320588191311626719064
192037
Rat (Rattus norvegicus)2277726153224243537722347
285751
Squirrel (Ictidomys tridecemlineatus)18826200001873690018736
988284

Laurasiatheria

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Alpaca (Vicugna pacos)1176511806116411241611625
24525
Cat (Felis catus)194932025919243250219241
602337
Cow (Bos taurus)19994221181991579019915
95043
Dog (Canis lupus familiaris)1985625160192406162219218
90762
Dolphin (Tursiops truncatus)165501661116409141616403
15228
Ferret (Mustela putorius furo)19910200621846114491618445
56794
Hedgehog (Erinaceus europaeus)1460114605143312702714304
57511
Horse (Equus caballus)20449226542033011968419646
2256116
Megabat (Pteropus vampyrus)1699017053168151751216803
26231
Microbat (Myotis lucifugus)197282071919564164919555
259786
Panda (Ailuropoda melanoleuca)193432113619110233219108
38988
Pig (Sus scrofa)2163025882212813492521256
2583557
Sheep (Ovis aries)2092122823205823392620556
109582
Shrew (Sorex araneus)1318713192129362514112895
88510

Afrotheria

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Elephant (Loxodonta africana)2003325635199091241819891
1974161
Hyrax (Procavia capensis)160571611415802255515797
32615
Tenrec (Echinops telfairi)16575165751610547010516000
113621

Xenarthra

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Armadillo (Dasypus novemcinctus)22711265512233637511522221
341993
Sloth (Choloepus hoffmanni)1239312435121722212312149
5396

Other mammals

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Opossum (Monodelphis domestica)21327223102063669126120375
2989107
Platypus (Ornithorhynchus anatinus)216982358420329136947819851
2853471
Tasmanian devil (Sarcophilus harrisii)1878822404179848041817966
951133
Tree Shrew (Tupaia belangeri)1547115475151683034215126
81429
Wallaby (Macropus eugenii)152901534215093197715086
4898

Birds & Reptiles

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Anole Lizard (Anolis carolinensis)18596191771817042619717973
2287130
Chicken (Gallus gallus)15508163541495555310214853
61837
Chinese softshell turtle (Pelodiscus sinensis)18189206691792226735417568
2259181
Duck (Anas platyrhynchos)156341635314978656914969
328120
Flycatcher (Ficedula albicollis)1530315983149153883814877
25268
Turkey (Meleagris gallopavo)141231649413984139313981
182237
Zebra Finch (Taeniopygia guttata)1748818204170644244717017
2389251

Amphibians

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
X.tropicalis (Xenopus tropicalis)18442227181832012261217708
323143

Fish

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Amazon molly (Poecilia formosa)2361530898235021133423468
214426
Cave fish (Astyanax mexicanus)2304223698225844584522539
1263474
Cod (Gadus morhua)2009522100195825136819514
1056125
Fugu (Takifugu rubripes)18523478411842796218425
93646
Medaka (Oryzias latipes)19699246741890679332318583
1142156
Platyfish (Xiphophorus maculatus)20379204542030277220300
23555
Spotted gar (Lepisosteus oculatus)1834122483181402013918101
116575
Stickleback (Gasterosteus aculeatus)2078727576200577306919988
1247130
Tetraodon (Tetraodon nigroviridis)1960223118192683346019208
1247178
Tilapia (Oreochromis niloticus)2143726763212951428021215
20008
Zebrafish (Danio rerio)26459431532580165852125280
4863131

Other vertebrates

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Coelacanth (Latimeria chalumnae)19569236011939917028519114
2512171
Lamprey (Petromyzon marinus)104151144299854301579828
163155

Other chordates

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
C.intestinalis (Ciona intestinalis)166711730212081459041811663
1371281
C.savignyi (Ciona savignyi)11616201551003215842179815
882223

Other eukaryotes

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
C.elegans (Caenorhabditis elegans)204473093914872557568108062
819018
Fruitfly (Drosophila melanogaster)139183036210717320119318786
36551
S.cerevisiae (Saccharomyces cerevisiae)669266923806288611582648
120919