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Statistics on protein trees

The protein tree pipeline is described at the following page.

List of available views:

Gene-tree coverage (per species)

Laurasiatheria

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Panda (Ailuropoda melanoleuca)193432113619107236219105
37287
Cow (Bos taurus)19994221181991579019915
96846
Dog (Canis lupus familiaris)1985625160192376192019217
89964
Horse (Equus caballus)20449226542032612359019736
2264112
Hedgehog (Erinaceus europaeus)1460114605143342671914315
56810
Cat (Felis catus)194932025919248245519243
580348
Ferret (Mustela putorius furo)19910200621846614441618450
56690
Microbat (Myotis lucifugus)1972820719195671611819549
260179
Sheep (Ovis aries)2092122823205763453020546
111482
Megabat (Pteropus vampyrus)1699017053168121781016802
24729
Shrew (Sorex araneus)1318713192129332543912894
86213
Pig (Sus scrofa)2163025882212733572921244
2570541
Dolphin (Tursiops truncatus)165501661116411139616405
15527
Alpaca (Vicugna pacos)1176511806116381271611622
24320

Primates

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Marmoset (Callithrix jacchus)2097843771206493291520634
139578
Gorilla (Gorilla gorilla gorilla)2096227473203825802920353
52438
Human (Homo sapiens)203719321120084287020084
5945
Macaque (Macaca mulatta)2190536384214784277221406
1007271
Mouse Lemur (Microcebus murinus)1631916319160682512616042
42733
Gibbon (Nomascus leucogenys)185751998818390185018390
199136
Bushbaby (Otolemur garnettii)19506199861941789619411
123556
Chimpanzee (Pan troglodytes)1875919907185532061818535
21310
Olive baboon (Papio anubis)19210209771912684019126
28630
Orangutan (Pongo abelii)2042421414198345904619788
43846
Tarsier (Tarsius syrichta)1362813675134102183213378
4778

Glires

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Guinea Pig (Cavia porcellus)186731977418461212418457
138063
Kangaroo rat (Dipodomys ordii)1579815853155742242015554
46919
Squirrel (Ictidomys tridecemlineatus)18826200001874185018741
984279
Mouse (Mus musculus)22175525482155462121021344
23704
Pika (Ochotona princeps)1600616006157572492415733
54928
Rabbit (Oryctolagus cuniculus)1929320588191311625019081
192040
Rat (Rattus norvegicus)2294025724225843567722507
296282

Other mammals

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Sloth (Choloepus hoffmanni)1239312435121702232212148
5375
Armadillo (Dasypus novemcinctus)22711265512234037111722223
340985
Tenrec (Echinops telfairi)16575165751610946610516004
110521
Elephant (Loxodonta africana)2003325635199101231819892
1975148
Wallaby (Macropus eugenii)152901534215093197715086
4868
Opossum (Monodelphis domestica)21327223102062969826020369
2964104
Platypus (Ornithorhynchus anatinus)216982358420320137850419816
2864454
Hyrax (Procavia capensis)160571611415797260515792
32015
Tasmanian devil (Sarcophilus harrisii)1878822404179848042017964
938127
Tree Shrew (Tupaia belangeri)1547115475151643074515119
83230

Fish

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Cave fish (Astyanax mexicanus)2304223698225904524622544
1294479
Zebrafish (Danio rerio)26459431532579966049525304
4880125
Cod (Gadus morhua)2009522100195775182919548
1061127
Stickleback (Gasterosteus aculeatus)2078727576200487396419984
1243128
Spotted gar (Lepisosteus oculatus)1834122483181402013318107
116487
Tilapia (Oreochromis niloticus)2143726763212831545721226
203710
Medaka (Oryzias latipes)19699246741887782235318524
1152156
Amazon molly (Poecilia formosa)20954211042091539220913
140812
Fugu (Takifugu rubripes)18523478411842598218423
96247
Tetraodon (Tetraodon nigroviridis)1960223118192683346019208
1226178
Platyfish (Xiphophorus maculatus)20379204542029881220296
29055

Sauropsids

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Duck (Anas platyrhynchos)156341635314977657914968
332119
Anole Lizard (Anolis carolinensis)18596191771816942724417925
2279125
Flycatcher (Ficedula albicollis)1530315983149213824814873
25267
Chicken (Gallus gallus)15508163541495655210114855
61238
Turkey (Meleagris gallopavo)141231649413984139313981
190231
Chinese softshell turtle (Pelodiscus sinensis)18189206691792326631417609
2234183
Zebra Finch (Taeniopygia guttata)1748818204170694194117028
2394253

Other vertebrates

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Coelacanth (Latimeria chalumnae)19569236011939317628719106
2472165
Lamprey (Petromyzon marinus)104151144299854301909795
170055
X.tropicalis (Xenopus tropicalis)18442227181832112157017751
323540

Others

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
C.elegans (Caenorhabditis elegans)205413025014927561468108117
821314
C.intestinalis (Ciona intestinalis)166711730212064460741311651
1384256
C.savignyi (Ciona savignyi)11616201551002415922249800
886222
Fruitfly (Drosophila melanogaster)139372695010687325019368751
36202
S.cerevisiae (Saccharomyces cerevisiae)669266923804288812022602
119919