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Statistics on protein trees

The protein tree pipeline is described at the following page.

List of available views:

Gene-tree coverage (per species)

Quick links: Primates, Rodents etc., Laurasiatheria, Afrotheria, Xenarthra, Other mammals, Birds & Reptiles, Amphibians, Fish, Other vertebrates, Other chordates, Other eukaryotes

Favourite species

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Human (Homo sapiens)202809354319950330519945
6684
Mouse (Mus musculus)22539547032190663318321723
25675
Zebrafish (Danio rerio)25638444872492171765424267
445542

Primates

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Bushbaby (Otolemur garnettii)19506199861941789819409
123059
Chimpanzee (Pan troglodytes)1875919907185312281618515
22114
Gibbon (Nomascus leucogenys)185751998818389186018389
212134
Gorilla (Gorilla gorilla gorilla)2096227473203825803120351
50844
Human (Homo sapiens)202809354319950330519945
6684
Macaque (Macaca mulatta)2190536384214844217421410
920302
Marmoset (Callithrix jacchus)2097843771206453331520630
140390
Mouse Lemur (Microcebus murinus)1631916319160672522416043
42934
Olive baboon (Papio anubis)19210209771913377019133
22333
Orangutan (Pongo abelii)2042421414198315934619785
42859
Tarsier (Tarsius syrichta)1362813675134072213313374
4709
Vervet/AGM (Chlorocebus sabaeus)191651925519064101019064
18056

Rodents etc.

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Guinea Pig (Cavia porcellus)186731977418458215418454
138467
Kangaroo rat (Dipodomys ordii)1579815853155722261715555
46121
Mouse (Mus musculus)22539547032190663318321723
25675
Pika (Ochotona princeps)1600616006157582482415734
54234
Rabbit (Oryctolagus cuniculus)1929320588191261673219094
192942
Rat (Rattus norvegicus)2229328609218963978221814
251721
Squirrel (Ictidomys tridecemlineatus)18826200001873987018739
993280

Laurasiatheria

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Alpaca (Vicugna pacos)1176511806116431221611627
24325
Cat (Felis catus)194932025919245248219243
603337
Cow (Bos taurus)19994221181991480019914
97750
Dog (Canis lupus familiaris)1985625160192406162019220
91261
Dolphin (Tursiops truncatus)165501661116409141616403
15331
Ferret (Mustela putorius furo)19910200621846414461618448
58399
Hedgehog (Erinaceus europaeus)1460114605143362652714309
56411
Horse (Equus caballus)20449226542031113859519716
2246125
Megabat (Pteropus vampyrus)1699017053168151751216803
25630
Microbat (Myotis lucifugus)1972820719195641641219552
260685
Panda (Ailuropoda melanoleuca)193432113619109234219107
39489
Pig (Sus scrofa)2163025882212703602521245
2565554
Sheep (Ovis aries)2092122823205713502520546
109288
Shrew (Sorex araneus)1318713192129342534112893
88414

Afrotheria

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Elephant (Loxodonta africana)2003325635199101231819892
1977164
Hyrax (Procavia capensis)160571611415802255515797
32317
Tenrec (Echinops telfairi)16575165751610147411815983
113324

Xenarthra

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Armadillo (Dasypus novemcinctus)22711265512233937213822201
346899
Sloth (Choloepus hoffmanni)1239312435121712222112150
5305

Other mammals

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Opossum (Monodelphis domestica)21327223102062770026620361
2984114
Platypus (Ornithorhynchus anatinus)216982358420321137748419837
2866466
Tasmanian devil (Sarcophilus harrisii)1878822404179897993017959
940134
Tree Shrew (Tupaia belangeri)1547115475151663054315123
81532
Wallaby (Macropus eugenii)152901534215096194715089
5038

Birds & Reptiles

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Anole Lizard (Anolis carolinensis)18596191771816942722117948
2279128
Chicken (Gallus gallus)15508163541495455410314851
61338
Chinese softshell turtle (Pelodiscus sinensis)18189206691792126828217639
2245187
Duck (Anas platyrhynchos)156341635314978656914969
323129
Flycatcher (Ficedula albicollis)1530315983149183854314875
25773
Turkey (Meleagris gallopavo)141231649413986137313983
190237
Zebra Finch (Taeniopygia guttata)1748818204170754134517030
2377251

Amphibians

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
X.tropicalis (Xenopus tropicalis)18442227181831912364017679
324844

Fish

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Amazon molly (Poecilia formosa)2361530898235001153423466
213734
Cave fish (Astyanax mexicanus)2304223698225764664422532
1305476
Cod (Gadus morhua)2009522100195885075719531
1041124
Fugu (Takifugu rubripes)18523478411842895218426
93745
Medaka (Oryzias latipes)19699246741890779232318584
1149157
Platyfish (Xiphophorus maculatus)20379204542030376220301
23851
Spotted gar (Lepisosteus oculatus)1834122483181362053618100
115690
Stickleback (Gasterosteus aculeatus)2078727576200557325819997
1242124
Tetraodon (Tetraodon nigroviridis)1960223118192683346219206
1230187
Tilapia (Oreochromis niloticus)2143726763212921457521217
198611
Zebrafish (Danio rerio)25638444872492171765424267
445542

Other vertebrates

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Coelacanth (Latimeria chalumnae)19569236011940016932519075
2516175
Lamprey (Petromyzon marinus)104151144299774381579820
164349

Other chordates

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
C.intestinalis (Ciona intestinalis)166711730212069460242811641
1361279
C.savignyi (Ciona savignyi)11616201551002715892249803
901227

Other eukaryotes

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
C.elegans (Caenorhabditis elegans)204473093914883556469097974
817816
Fruitfly (Drosophila melanogaster)139183036210722319619168806
36410
S.cerevisiae (Saccharomyces cerevisiae)669266923802289011642638
120219