EnsemblEnsembl Home

Statistics on protein trees

The protein tree pipeline is described at the following page.

List of available views:

Gene-tree coverage (per species)

Quick links: Primates, Rodents etc., Laurasiatheria, Afrotheria, Xenarthra, Other mammals, Birds & Reptiles, Amphibians, Fish, Other vertebrates, Other chordates, Other eukaryotes

Favourite species

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Human (Homo sapiens)202959389219948347219945
6833
Mouse (Mus musculus)22529566252170882144721261
21711
Zebrafish (Danio rerio)25638444872491072857724333
448129

Primates

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Bushbaby (Otolemur garnettii)19506199861941591819407
123843
Chimpanzee (Pan troglodytes)1875919907185332261618517
22312
Gibbon (Nomascus leucogenys)185751998818391184018391
201109
Gorilla (Gorilla gorilla gorilla)2096227473203865762920357
51638
Human (Homo sapiens)202959389219948347219945
6833
Macaque (Macaca mulatta)2190536384214844216921415
950263
Marmoset (Callithrix jacchus)2097843771206453331520630
141276
Mouse Lemur (Microcebus murinus)1631916319160692502416045
43327
Olive baboon (Papio anubis)19210209771913278019132
23122
Orangutan (Pongo abelii)2042421414198325924919783
43544
Tarsier (Tarsius syrichta)1362813675134132152613387
4659
Vervet/AGM (Chlorocebus sabaeus)191651925519062103019062
16944

Rodents etc.

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Guinea Pig (Cavia porcellus)186731977418463210218461
138156
Kangaroo rat (Dipodomys ordii)1579815853155672311715550
47115
Mouse (Mus musculus)22529566252170882144721261
21711
Pika (Ochotona princeps)1600616006157592472415735
56023
Rabbit (Oryctolagus cuniculus)1929320588191211722919092
193333
Rat (Rattus norvegicus)2227728753217934849121702
232613
Squirrel (Ictidomys tridecemlineatus)18826200001873888018738
987266
Tree Shrew (Tupaia belangeri)1547115475151782934015138
81525

Laurasiatheria

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Alpaca (Vicugna pacos)1176511806116431221611627
24020
Cat (Felis catus)194932025919229264419225
597305
Cow (Bos taurus)19994221181991678019916
99638
Dog (Canis lupus familiaris)1985625157192316251819213
90546
Dolphin (Tursiops truncatus)165501661116411139616405
14724
Ferret (Mustela putorius furo)19910200621846914411618453
59574
Hedgehog (Erinaceus europaeus)1460114605143422591914323
5806
Horse (Equus caballus)20449226542032812166919659
2264106
Megabat (Pteropus vampyrus)1699017053168211691216809
26928
Microbat (Myotis lucifugus)197282071919559169719552
260074
Panda (Ailuropoda melanoleuca)193432113619105238219103
39376
Pig (Sus scrofa)2163025882212363942921206
2571508
Sheep (Ovis aries)2092122823205204013320487
109961
Shrew (Sorex araneus)1318713192129402474712893
8969

Afrotheria

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Elephant (Loxodonta africana)2003325635199081251819889
1974145
Hyrax (Procavia capensis)160571611415802255515797
31611
Tenrec (Echinops telfairi)16575165751610646910715999
113719

Xenarthra

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Armadillo (Dasypus novemcinctus)2271126551223513608622265
348580
Sloth (Choloepus hoffmanni)1239312435121692242112148
5384

Other mammals

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Opossum (Monodelphis domestica)21327223102064268525120391
292992
Platypus (Ornithorhynchus anatinus)216982358420279141933919939
2876387
Tasmanian devil (Sarcophilus harrisii)1878822404179828062317959
944118
Wallaby (Macropus eugenii)152901534215097193715090
4937

Birds & Reptiles

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Anole Lizard (Anolis carolinensis)18596191771816343322817935
2265121
Chicken (Gallus gallus)15508163541494756110414843
62630
Chinese softshell turtle (Pelodiscus sinensis)18189206691790928029617613
2242141
Duck (Anas platyrhynchos)156341635314946688914937
315109
Flycatcher (Ficedula albicollis)1530315983149063974714859
25551
Turkey (Meleagris gallopavo)141231649413974149313971
187215
Zebra Finch (Taeniopygia guttata)1748818204170424467016972
2366235

Amphibians

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
X.tropicalis (Xenopus tropicalis)18442227181831612669517621
323835

Fish

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Amazon molly (Poecilia formosa)2361530898235001153423466
214126
Cave fish (Astyanax mexicanus)2304223698225305125022480
1309393
Cod (Gadus morhua)2009522100195705251919551
1040113
Fugu (Takifugu rubripes)185234784118423100218421
96040
Medaka (Oryzias latipes)19699246741889780232018577
1156139
Platyfish (Xiphophorus maculatus)20379204542029485220292
24046
Spotted gar (Lepisosteus oculatus)1834122483181312103918092
113366
Stickleback (Gasterosteus aculeatus)2078727576200537345819995
1269111
Tetraodon (Tetraodon nigroviridis)1960223118192493535819191
1230150
Tilapia (Oreochromis niloticus)2143726763212931444321250
19987
Zebrafish (Danio rerio)25638444872491072857724333
448129

Other vertebrates

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Coelacanth (Latimeria chalumnae)19569236011938818127719111
2473140
Lamprey (Petromyzon marinus)104151144299424731859756
160841

Other chordates

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
C.intestinalis (Ciona intestinalis)166711730212042462942511616
1403207
C.savignyi (Ciona savignyi)11616201551000316132209783
903183

Other eukaryotes

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
C.elegans (Caenorhabditis elegans)204473093914863558468987965
818511
Fruitfly (Drosophila melanogaster)139183036210714320419208794
36430
S.cerevisiae (Saccharomyces cerevisiae)669266923807288511612646
120616