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Statistics on protein trees

The protein tree pipeline is described at the following page.

List of available views:

Gene-tree coverage (per species)

Quick links: Primates, Rodents etc., Laurasiatheria, Afrotheria, Xenarthra, Other mammals, Birds & Reptiles, Amphibians, Fish, Other vertebrates, Other chordates, Other eukaryotes

Favourite species

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Human (Homo sapiens)203469315720059287520054
7618
Mouse (Mus musculus)22175525482155562021821337
235611
Zebrafish (Danio rerio)26459431532580165857425227
4884121

Primates

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Bushbaby (Otolemur garnettii)19506199861941888619412
123260
Chimpanzee (Pan troglodytes)1875919907185342251618518
22523
Gibbon (Nomascus leucogenys)185751998818389186018389
200143
Gorilla (Gorilla gorilla gorilla)2096227473203835793120352
49944
Human (Homo sapiens)203469315720059287520054
7618
Macaque (Macaca mulatta)2190536384214914147721414
953294
Marmoset (Callithrix jacchus)2097843771206423361220630
145793
Mouse Lemur (Microcebus murinus)1631916319160692502616043
44435
Olive baboon (Papio anubis)19210209771913476019134
23935
Orangutan (Pongo abelii)2042421414198335915119782
43556
Tarsier (Tarsius syrichta)1362813675134082203313375
4938
Chlorocebus sabaeus19165192551906699019066
18260

Rodents etc.

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Guinea Pig (Cavia porcellus)186731977418459214618453
138968
Kangaroo rat (Dipodomys ordii)1579815853155712272015551
45922
Mouse (Mus musculus)22175525482155562021821337
235611
Pika (Ochotona princeps)1600616006157572492415733
56430
Rabbit (Oryctolagus cuniculus)1929320588191311621119120
195048
Rat (Rattus norvegicus)2277726153224213567522346
286957
Squirrel (Ictidomys tridecemlineatus)18826200001873888018738
1000300

Laurasiatheria

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Alpaca (Vicugna pacos)1176511806116431221611627
23925
Cat (Felis catus)194932025919249244419245
602356
Cow (Bos taurus)19994221181991678019916
98058
Dog (Canis lupus familiaris)1985625160192396172019219
89764
Dolphin (Tursiops truncatus)165501661116410140616404
14427
Ferret (Mustela putorius furo)19910200621845714531618441
58095
Hedgehog (Erinaceus europaeus)1460114605143312701914312
56811
Horse (Equus caballus)20449226542033511452319812
2264128
Megabat (Pteropus vampyrus)1699017053168171731016807
25132
Microbat (Myotis lucifugus)197282071919563165719556
263787
Panda (Ailuropoda melanoleuca)193432113619110233219108
38896
Pig (Sus scrofa)2163025882212723582721245
2637568
Sheep (Ovis aries)2092122823205853363220553
110892
Shrew (Sorex araneus)1318713192129312564112890
87511

Afrotheria

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Elephant (Loxodonta africana)2003325635199101231619894
1995167
Hyrax (Procavia capensis)160571611415799258515794
31615
Tenrec (Echinops telfairi)16575165751610047512415976
113822

Xenarthra

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Armadillo (Dasypus novemcinctus)22711265512234236912722215
3454100
Sloth (Choloepus hoffmanni)1239312435121672262312144
5436

Other mammals

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Opossum (Monodelphis domestica)21327223102063369427120362
2959110
Platypus (Ornithorhynchus anatinus)216982358420320137844719873
2916479
Tasmanian devil (Sarcophilus harrisii)1878822404179868023217954
957132
Tree Shrew (Tupaia belangeri)1547115475151673044115126
83732
Wallaby (Macropus eugenii)152901534215094196715087
4897

Birds & Reptiles

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Anole Lizard (Anolis carolinensis)18596191771816942720917960
2285128
Chicken (Gallus gallus)15508163541495855010114857
61639
Chinese softshell turtle (Pelodiscus sinensis)18189206691792126823617685
2260183
Duck (Anas platyrhynchos)156341635314968666914959
327125
Flycatcher (Ficedula albicollis)1530315983149193844614873
24473
Turkey (Meleagris gallopavo)141231649413987136313984
187247
Zebra Finch (Taeniopygia guttata)1748818204170674217116996
2426266

Amphibians

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
X.tropicalis (Xenopus tropicalis)18442227181831912371117608
324042

Fish

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Amazon molly (Poecilia formosa)2361530898235011143223469
214534
Cave fish (Astyanax mexicanus)2304223698225994434122558
1279479
Cod (Gadus morhua)2009522100195795164319536
1042131
Fugu (Takifugu rubripes)18523478411842895218426
95345
Medaka (Oryzias latipes)19699246741890779233618571
1150164
Platyfish (Xiphophorus maculatus)20379204542030475220302
23556
Spotted gar (Lepisosteus oculatus)1834122483181382034618092
115681
Stickleback (Gasterosteus aculeatus)2078727576200547337319981
1254134
Tetraodon (Tetraodon nigroviridis)1960223118192673356019207
1242185
Tilapia (Oreochromis niloticus)2143726763212931447921214
19988
Zebrafish (Danio rerio)26459431532580165857425227
4884121

Other vertebrates

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Coelacanth (Latimeria chalumnae)19569236011939917030419095
2488178
Lamprey (Petromyzon marinus)104151144299844311549830
164749

Other chordates

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
C.intestinalis (Ciona intestinalis)166711730212077459441811659
1363271
C.savignyi (Ciona savignyi)11616201551002815882179811
914229

Other eukaryotes

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
C.elegans (Caenorhabditis elegans)205413025014927561468678060
822416
Fruitfly (Drosophila melanogaster)139372695010687325018908797
36332
S.cerevisiae (Saccharomyces cerevisiae)669266923804288811732631
120920