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Statistics on protein trees

The protein tree pipeline is described at the following page.

List of available views:

Gene-tree coverage (per species)

Quick links: Primates, Rodents etc., Laurasiatheria, Afrotheria, Xenarthra, Other mammals, Birds & Reptiles, Amphibians, Fish, Other vertebrates, Other chordates, Other eukaryotes

Favourite species

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Human (Homo sapiens)202769367319931345019931
6653
Mouse (Mus musculus)22542553472164689652221124
21482
Zebrafish (Danio rerio)25638444872492071866824252
447632

Primates

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Bushbaby (Otolemur garnettii)19506199861941690619410
122649
Chimpanzee (Pan troglodytes)1875919907185362231618520
21912
Gibbon (Nomascus leucogenys)185751998818392183018392
218117
Gorilla (Gorilla gorilla gorilla)2096227473203895732920360
50141
Human (Homo sapiens)202769367319931345019931
6653
Macaque (Macaca mulatta)2190536384214904155321437
972260
Marmoset (Callithrix jacchus)2097843771206463321520631
144275
Mouse Lemur (Microcebus murinus)1631916319160712482416047
43229
Olive baboon (Papio anubis)19210209771913476019134
22625
Orangutan (Pongo abelii)2042421414198365884919787
44248
Tarsier (Tarsius syrichta)1362813675134112173413377
4699
Vervet/AGM (Chlorocebus sabaeus)191651925519063102019063
16850

Rodents etc.

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Guinea Pig (Cavia porcellus)186731977418463210718456
138355
Kangaroo rat (Dipodomys ordii)1579815853155662321715549
46017
Mouse (Mus musculus)22542553472164689652221124
21482
Pika (Ochotona princeps)1600616006157602462415736
55822
Rabbit (Oryctolagus cuniculus)1929320588191221715319069
192936
Rat (Rattus norvegicus)22293286092189739612321774
256010
Squirrel (Ictidomys tridecemlineatus)18826200001874086018740
984267

Laurasiatheria

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Alpaca (Vicugna pacos)1176511806116441211611628
24320
Cat (Felis catus)194932025919240253219238
611311
Cow (Bos taurus)19994221181991678019916
99939
Dog (Canis lupus familiaris)1985625157192296271819211
90749
Dolphin (Tursiops truncatus)165501661116409141616403
15125
Ferret (Mustela putorius furo)19910200621846914411818451
59674
Hedgehog (Erinaceus europaeus)1460114605143382631714321
5759
Horse (Equus caballus)20449226542032312663119692
2251108
Megabat (Pteropus vampyrus)1699017053168221681216810
26231
Microbat (Myotis lucifugus)197282071919566162719559
261875
Panda (Ailuropoda melanoleuca)193432113619113230219111
37879
Pig (Sus scrofa)2163025882212663642321243
2579507
Sheep (Ovis aries)2092122823205263953120495
110060
Shrew (Sorex araneus)1318713192129412464412897
88510

Afrotheria

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Elephant (Loxodonta africana)2003325635199111221619895
1975149
Hyrax (Procavia capensis)160571611415802255515797
31811
Tenrec (Echinops telfairi)16575165751610846711415994
114617

Xenarthra

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Armadillo (Dasypus novemcinctus)22711265512235036113922211
344473
Sloth (Choloepus hoffmanni)1239312435121652282112144
5385

Other mammals

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Opossum (Monodelphis domestica)21327223102063369428320350
292987
Platypus (Ornithorhynchus anatinus)216982358420324137438319941
2895391
Tasmanian devil (Sarcophilus harrisii)1878822404179808081917961
941120
Tree Shrew (Tupaia belangeri)1547115475151713004315128
82425
Wallaby (Macropus eugenii)152901534215098192715091
5007

Birds & Reptiles

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Anole Lizard (Anolis carolinensis)18596191771817941723117948
2287120
Chicken (Gallus gallus)15508163541495455411214842
61529
Chinese softshell turtle (Pelodiscus sinensis)18189206691791827127917639
2269139
Duck (Anas platyrhynchos)156341635314982652914973
340111
Flycatcher (Ficedula albicollis)1530315983149233804314880
25049
Turkey (Meleagris gallopavo)141231649413986137313983
189217
Zebra Finch (Taeniopygia guttata)1748818204170654234717018
2380241

Amphibians

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
X.tropicalis (Xenopus tropicalis)18442227181832112167017651
322737

Fish

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Amazon molly (Poecilia formosa)2361530898235031123423469
214928
Cave fish (Astyanax mexicanus)2304223698225704724822522
1297382
Cod (Gadus morhua)2009522100195855102719558
1058106
Fugu (Takifugu rubripes)18523478411843093218428
95642
Medaka (Oryzias latipes)19699246741890279731318589
1169146
Platyfish (Xiphophorus maculatus)20379204542030871220306
24546
Spotted gar (Lepisosteus oculatus)1834122483181362054118095
115762
Stickleback (Gasterosteus aculeatus)2078727576200527355419998
1244109
Tetraodon (Tetraodon nigroviridis)1960223118192713316019211
1235159
Tilapia (Oreochromis niloticus)2143726763212911467721214
20037
Zebrafish (Danio rerio)25638444872492071866824252
447632

Other vertebrates

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Coelacanth (Latimeria chalumnae)19569236011940116826919132
2487147
Lamprey (Petromyzon marinus)104151144299794361999780
167039

Other chordates

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
C.intestinalis (Ciona intestinalis)166711730212062460942411638
1402198
C.savignyi (Ciona savignyi)11616201551003215842209812
909189

Other eukaryotes

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
C.elegans (Caenorhabditis elegans)204473093914870557768658005
817311
Fruitfly (Drosophila melanogaster)139183036210709320919498760
36360
S.cerevisiae (Saccharomyces cerevisiae)669266923807288511762631
120117