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Statistics on protein trees

The protein tree pipeline is described at the following page.

List of available views:

Gene-tree coverage (per species)

Quick links: Primates, Rodents etc., Laurasiatheria, Afrotheria, Xenarthra, Other mammals, Birds & Reptiles, Amphibians, Fish, Other vertebrates, Other chordates, Other eukaryotes

Favourite species

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Human (Homo sapiens)203469315720057289520052
7286
Mouse (Mus musculus)22338534422169864020621492
24376
Zebrafish (Danio rerio)26459431532580365657125232
4873125

Primates

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Bushbaby (Otolemur garnettii)19506199861941492819406
123560
Chimpanzee (Pan troglodytes)1875919907185342251618518
21519
Gibbon (Nomascus leucogenys)185751998818389186018389
196142
Gorilla (Gorilla gorilla gorilla)2096227473203855772920356
49541
Human (Homo sapiens)203469315720057289520052
7286
Macaque (Macaca mulatta)2190536384214874186921418
948280
Marmoset (Callithrix jacchus)2097843771206473311220635
140886
Mouse Lemur (Microcebus murinus)1631916319160682512416044
43032
Olive baboon (Papio anubis)19210209771913476019134
24331
Orangutan (Pongo abelii)2042421414198345905019784
44656
Tarsier (Tarsius syrichta)1362813675134082203313375
4729
Vervet/AGM (Chlorocebus sabaeus)19165192551906699019066
17358

Rodents etc.

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Guinea Pig (Cavia porcellus)186731977418461212418457
139265
Kangaroo rat (Dipodomys ordii)1579815853155702282015550
46922
Mouse (Mus musculus)22338534422169864020621492
24376
Pika (Ochotona princeps)1600616006157572492415733
56628
Rabbit (Oryctolagus cuniculus)1929320588191301632719103
192941
Rat (Rattus norvegicus)2277726153224243537522349
286449
Squirrel (Ictidomys tridecemlineatus)18826200001874086018740
998285

Laurasiatheria

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Alpaca (Vicugna pacos)1176511806116401251611624
24124
Cat (Felis catus)194932025919251242219249
598333
Cow (Bos taurus)19994221181991480019914
95649
Dog (Canis lupus familiaris)1985625160192416152019221
89764
Dolphin (Tursiops truncatus)165501661116411139616405
15026
Ferret (Mustela putorius furo)19910200621846114491618445
56794
Hedgehog (Erinaceus europaeus)1460114605143362651914317
5669
Horse (Equus caballus)20449226542032512454319782
2248115
Megabat (Pteropus vampyrus)1699017053168161741216804
25831
Microbat (Myotis lucifugus)1972820719195641641219552
261383
Panda (Ailuropoda melanoleuca)193432113619110233219108
37987
Pig (Sus scrofa)2163025882212753552521250
2539561
Sheep (Ovis aries)2092122823205823392620556
110383
Shrew (Sorex araneus)1318713192129372504912888
88212

Afrotheria

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Elephant (Loxodonta africana)2003325635199111222119890
1985154
Hyrax (Procavia capensis)160571611415796261515791
32214
Tenrec (Echinops telfairi)16575165751610147411315988
113521

Xenarthra

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Armadillo (Dasypus novemcinctus)22711265512234336811622227
343794
Sloth (Choloepus hoffmanni)1239312435121692242112148
5505

Other mammals

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Opossum (Monodelphis domestica)21327223102063369424920384
2980119
Platypus (Ornithorhynchus anatinus)216982358420342135647319869
2840467
Tasmanian devil (Sarcophilus harrisii)1878822404179868021917967
936130
Tree Shrew (Tupaia belangeri)1547115475151713004215129
83228
Wallaby (Macropus eugenii)152901534215096194715089
4879

Birds & Reptiles

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Anole Lizard (Anolis carolinensis)18596191771817242423417938
2305133
Chicken (Gallus gallus)15508163541495855010214856
63036
Chinese softshell turtle (Pelodiscus sinensis)18189206691792126833617585
2233181
Duck (Anas platyrhynchos)156341635314975659914966
341123
Flycatcher (Ficedula albicollis)1530315983149203834314877
25769
Turkey (Meleagris gallopavo)141231649413987136013987
176239
Zebra Finch (Taeniopygia guttata)1748818204170684208716981
2405253

Amphibians

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
X.tropicalis (Xenopus tropicalis)18442227181832112160617715
328338

Fish

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Amazon molly (Poecilia formosa)2361530898235041113423470
213929
Cave fish (Astyanax mexicanus)2304223698225904525022540
1292475
Cod (Gadus morhua)2009522100195815144919532
1053122
Fugu (Takifugu rubripes)18523478411842895218426
96143
Medaka (Oryzias latipes)19699246741890979032318586
1156156
Platyfish (Xiphophorus maculatus)20379204542030673220304
23253
Spotted gar (Lepisosteus oculatus)1834122483181352064618089
115275
Stickleback (Gasterosteus aculeatus)2078727576200507376919981
1252125
Tetraodon (Tetraodon nigroviridis)1960223118192703326019210
1243180
Tilapia (Oreochromis niloticus)2143726763212951428121214
19905
Zebrafish (Danio rerio)26459431532580365657125232
4873125

Other vertebrates

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
Coelacanth (Latimeria chalumnae)19569236011939717230019097
2493170
Lamprey (Petromyzon marinus)104151144299904251569834
164252

Other chordates

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
C.intestinalis (Ciona intestinalis)166711730212081459041811663
1411270
C.savignyi (Ciona savignyi)11616201551002915872239806
897224

Other eukaryotes

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splitsGene events
C.elegans (Caenorhabditis elegans)204473093914873557468767997
816716
Fruitfly (Drosophila melanogaster)139372695010688324919238765
36161
S.cerevisiae (Saccharomyces cerevisiae)669266923802289012052597
120319