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Species tree

Generated by the Compara team: Static image (PDF) · Interactive image (requires Java)

Current Ensembl Species

Note: to find out which species were in previous releases, please see the table of assemblies

Common nameScientific nameTaxon IDAssemblyVariation databaseRegulation databasePre assembly
AardvarkAardvark
(Pre only)
Orycteropus afer afer1230840---OryAfe1
AlpacaAlpacaVicugna pacos30538vicPac1---
Amazon mollyAmazon molly
(Pre only)
Poecilia formosa237006---Poecilia_formosa-5.1.2
Anole lizardAnole lizardAnolis carolinensis28377AnoCar2.0---
ArmadilloArmadilloDasypus novemcinctus9361Dasnov3.0---
BudgerigarBudgerigar
(Pre only)
Melopsittacus undulatus13146---MelUnd6.3
BushbabyBushbabyOtolemur garnettii30611OtoGar3---
C.intestinalisC.intestinalisCiona intestinalis7719KH-Y-
C.savignyiC.savignyiCiona savignyi51511CSAV2.0---
C. elegansC. elegansCaenorhabditis elegans6239WBcel235-Y-
CatCatFelis catus9685Felis_catus_6.2Y--
Cave fishCave fishAstyanax mexicanus7994AstMex102---
ChickenChickenGallus gallus9031Galgal4YY-
ChimpanzeeChimpanzeePan troglodytes9598CHIMP2.1.4YYPan_troglodytes_2.1.3
Chinese hamsterChinese hamster
(Pre only)
Cricetulus griseus8479---CriGRi_1.0
Chinese softshell turtleChinese softshell turtlePelodiscus sinensis13735PelSin_1.0---
CodCodGadus morhua8049gadMor1---
CoelacanthCoelacanthLatimeria chalumnae7897LatCha1---
CowCowBos taurus9913UMD3.1YY-
Crab-eating macaqueCrab-eating macaque
(Pre only)
Macaca fascicularis9541---Macaca_fascicularis_5.0
DogDogCanis lupus familiaris9615CanFam3.1YY-
DolphinDolphinTursiops truncatus9739turTru1--Ttru14
DuckDuckAnas platyrhynchos8839BGI_duck_1.0---
ElephantElephantLoxodonta africana9785loxAfr3---
FerretFerretMustela putorius furo9669MusPutFur1.0---
FlycatcherFlycatcherFicedula albicollis59894FicAlb_1.4---
FruitflyFruitflyDrosophila melanogaster7227BDGP5YY-
FuguFuguTakifugu rubripes31033FUGU4---
GibbonGibbonNomascus leucogenys61853Nleu1.0Y--
GorillaGorillaGorilla gorilla gorilla9595gorGor3.1---
Guinea PigGuinea PigCavia porcellus10141cavPor3---
Hamadryas BaboonHamadryas Baboon
(Pre only)
Papio hamadryas9557---Pham
HedgehogHedgehogErinaceus europaeus9365HEDGEHOG--EriEur2
HorseHorseEquus caballus9796EquCab2Y--
HumanHumanHomo sapiens9606GRCh37YYGRCh38
HyraxHyraxProcavia capensis9813proCap1---
Kangaroo ratKangaroo ratDipodomys ordii10020dipOrd1---
LampreyLampreyPetromyzon marinus7757Pmarinus_7.0---
Lesser hedgehog tenrecLesser hedgehog tenrecEchinops telfairi9371TENREC---
MacaqueMacaqueMacaca mulatta9544MMUL_1YY-
MarmosetMarmosetCallithrix jacchus9483C_jacchus3.2.1---
MedakaMedakaOryzias latipes8090MEDAKA1---
MegabatMegabatPteropus vampyrus132908pteVam1---
MicrobatMicrobatMyotis lucifugus59463Myoluc2.0---
MouseMouseMus musculus10090GRCm38YY-
Mouse LemurMouse LemurMicrocebus murinus30608micMur1---
Naked mole-ratNaked mole-rat
(Pre only)
Heterocephalus glaber10181---HetGla_female_1.0
Olive BaboonOlive Baboon
(Pre only)
Papio anubis9555---Panu_2.0
OpossumOpossumMonodelphis domestica13616BROADO5Y--
OrangutanOrangutanPongo abelii9601PPYG2Y--
Painted TurtlePainted Turtle
(Pre only)
Chrysemys picta bellii8479---ChrPicBel3.0.1
PandaPandaAiluropoda melanoleuca9646ailMel1---
PigPigSus scrofa9823Sscrofa10.2YY-
Pig FPC_mapPig FPC_map
(Pre only)
Sus scrofa map---MAP
PikaPikaOchotona princeps9978pika--OchPri3
PlatyfishPlatyfishXiphophorus maculatus8083Xipmac4.4.2---
PlatypusPlatypusOrnithorhynchus anatinus9258OANA5YY-
Prairie volePrairie vole
(Pre only)
Microtus ochrogaster79684---MicOch1.0
RabbitRabbitOryctolagus cuniculus9986OryCun2.0-Y-
RatRatRattus norvegicus10116Rnor_5.0YY-
RhinocerosRhinoceros
(Pre only)
Ceratotherium simum simum73337---CerSimSim1
S. cerevisiaeS. cerevisiaeSaccharomyces cerevisiae4932R64-1-1YY-
SheepSheepOvis aries9940Oar_v3.1Y--
ShrewShrewSorex araneus42254COMMON_SHREW1--SorAra2.0
SlothSlothCholoepus hoffmanni9358choHof1---
Spotted garSpotted garLepisosteus oculatus7918LepOcu1---
SquirrelSquirrelIctidomys tridecemlineatus43179spetri2---
Squirrel monkeySquirrel monkey
(Pre only)
Saimiri boliviensis39432---SalBol1.0
SticklebackSticklebackGasterosteus aculeatus69293BROADS1---
TarsierTarsierTarsius syrichta9478tarSyr1---
Tasmanian devilTasmanian devilSarcophilus harrisii9305DEVIL7.0---
TetraodonTetraodonTetraodon nigroviridis99883TETRAODON8Y--
TilapiaTilapiaOreochromis niloticus8128Orenil1.0---
Tree ShrewTree ShrewTupaia belangeri37347TREESHREW---
TurkeyTurkeyMeleagris gallopavo9103UMD2Y--
Vervet monkeyVervet monkey
(Pre only)
Chlorocebus sabaeus60711---ChlSab1.0
WallabyWallabyMacropus eugenii9315Meug_1.0---
XenopusXenopusXenopus tropicalis8364JGI_4.2-Y-
Zebra FinchZebra FinchTaeniopygia guttata59729taeGut3.2.4Y--
ZebrafishZebrafishDanio rerio7955Zv9YY-

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Other Metazoa

Additional metazoan genomes (initially insect vectors and nematodes) are available from EnsemblMetazoa

Plants and Fungi

Plant and fungal genomes can be found at EnsemblPlants and EnsemblFungi

Protists, Bacteria and Archaea

Unicellular eukaryotic and prokaryotic genomes can be found at EnsemblProtists and EnsemblBacteria respectively.