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Statistics on ncRNA trees

Since release 58, Compara computes phylogenetic trees for the non-coding RNAs annotating by RFAM. The manuscript is in preparation. More information can be obtained here

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Size of the trees (per root node)

Species# Trees% Trees# Genes% GenesMin # genesMax # genesAverage # genesMin # speciesMax # speciesAverage # speciesAverage # genes per species
Chordates (Chordata)69
10381
12385150.4115435.55.4
Vertebrates (Vertebrata)84
14761
5394175.745232.97.2
Bony vertebrates (Euteleostomi)175
17068
339697.525032.95.5
Zebrafish (Danio rerio)11
2561
175301232.8111.0232.8
Stickleback (Gasterosteus aculeatus)1
196
196196196.0111.0196.0
Lobe-finned fish (Sarcopterygii)50
9620
4392192.444421.811.7
Tetrapods (Tetrapoda)26
2990
2321115.024426.46.1
Amniotes (Amniota)96
9250
239596.324216.012.0
Mammals (Mammalia)27
3127
2348115.824021.96.8
Marsupials and Placental mammals (Theria)28
2361
235884.323814.79.1
Placental mammals (Eutheria)386
19630
239950.92379.36.2
Human (Homo sapiens)1
3
333.0111.03.0
Mouse (Mus musculus)1
352
352352352.0111.0352.0
Cat (Felis catus)2
416
157259208.0111.0208.0
Opossum (Monodelphis domestica)1
2
222.0111.02.0
Platypus (Ornithorhynchus anatinus)8
1817
3342227.1111.0227.1
Reptiles and birds (Sauria)1
6
666.0555.01.2
Anole Lizard (Anolis carolinensis)1
6
666.0111.06.0
Coelacanth (Latimeria chalumnae)3
903
263320301.0111.0301.0
Lamprey (Petromyzon marinus)6
1400
145297233.3111.0233.3
Ciona sea squirts (Ciona)4
9
232.2222.01.1