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Statistics on ncRNA trees

Since release 58, Compara computes phylogenetic trees for the non-coding RNAs annotating by RFAM. The manuscript is in preparation. More information can be obtained here

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Size of the trees (per root node)

Species# Trees% Trees# Genes% GenesMin # genesMax # genesAverage # genesMin # speciesMax # speciesAverage # speciesAverage # genes per species
Chordates (Chordata)69
11718
16384169.8136544.14.6
Vertebrates (Vertebrata)86
16520
6399192.166338.46.7
Bony vertebrates (Euteleostomi)234
27971
3398119.526234.35.5
Lobe-finned fish (Sarcopterygii)39
7177
5376184.054824.98.9
Tetrapods (Tetrapoda)19
2013
2378105.925028.19.5
Amniotes (Amniota)85
7214
235984.924721.14.3
Reptiles and birds (Sauria)1
12
121212.0666.02.0
Duck (Anas platyrhynchos)1
2
222.0111.02.0
Anole Lizard (Anolis carolinensis)5
1159
6342231.8111.0231.8
Mammals (Mammalia)21
2504
2362119.224322.86.8
Platypus (Ornithorhynchus anatinus)8
1835
3357229.4111.0229.4
Marsupials and Placental mammals (Theria)28
3705
2399132.324016.610.9
Opossum (Monodelphis domestica)1
2
222.0111.02.0
Placental mammals (Eutheria)435
24679
239856.723910.85.6
Human (Homo sapiens)1
6
666.0111.06.0
Cat (Felis catus)2
562
197365281.0111.0281.0
Mouse (Mus musculus)1
368
368368368.0111.0368.0
Coelacanth (Latimeria chalumnae)5
1357
188342271.4111.0271.4
Ray-finned fishes (Neopterygii)2
537
226311268.5222.0134.2
Teleost fishes (Clupeocephala)1
306
306306306.0333.0102.0
Stickleback (Gasterosteus aculeatus)1
191
191191191.0111.0191.0
Zebrafish (Danio rerio)8
2025
191334253.1111.0253.1
Cave fish (Astyanax mexicanus)1
2
222.0111.02.0
Spotted gar (Lepisosteus oculatus)7
1714
200333244.9111.0244.9
Lamprey (Petromyzon marinus)5
1324
238297264.8111.0264.8
Ciona sea squirts (Ciona)4
9
232.2222.01.1