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Statistics on ncRNA trees

Since release 58, Compara computes phylogenetic trees for the non-coding RNAs annotating by RFAM. The manuscript is in preparation. More information can be obtained here

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Size of the trees (per root node)

Species# Trees% Trees# Genes% GenesMin # genesMax # genesAverage # genesMin # speciesMax # speciesAverage # speciesAverage # genes per species
Chordates (Chordata)71
12192
16395171.7136444.44.7
Vertebrates (Vertebrata)86
15345
6382178.426238.07.5
Bony vertebrates (Euteleostomi)234
28580
2397122.126135.44.7
Ray-finned fishes (Neopterygii)2
631
296335315.5222.0157.8
Spotted gar (Lepisosteus oculatus)6
1635
237300272.5111.0272.5
Zebrafish (Danio rerio)4
922
166289230.5111.0230.5
Cave fish (Astyanax mexicanus)1
2
222.0111.02.0
Cod (Gadus morhua)1
226
226226226.0111.0226.0
Stickleback (Gasterosteus aculeatus)1
383
383383383.0111.0383.0
Lobe-finned fish (Sarcopterygii)47
9738
5393207.224723.913.0
Coelacanth (Latimeria chalumnae)5
1368
221338273.6111.0273.6
Tetrapods (Tetrapoda)19
1777
235493.524929.14.4
Amniotes (Amniota)91
8847
239597.224822.24.5
Reptiles and birds (Sauria)1
12
121212.0666.02.0
Duck (Anas platyrhynchos)1
2
222.0111.02.0
Anole Lizard (Anolis carolinensis)6
1241
6321206.8111.0206.8
Mammals (Mammalia)25
2806
2263112.224224.05.4
Platypus (Ornithorhynchus anatinus)9
1834
3384203.8111.0203.8
Marsupials and Placental mammals (Theria)32
4245
2369132.723915.710.5
Placental mammals (Eutheria)437
25843
239759.123810.56.5
Cat (Felis catus)2
420
184236210.0111.0210.0
Cow (Bos taurus)1
2
222.0111.02.0
Human (Homo sapiens)1
6
666.0111.06.0
Rat (Rattus norvegicus)2
4
222.0111.02.0
Opossum (Monodelphis domestica)1
2
222.0111.02.0
Lamprey (Petromyzon marinus)4
981
190295245.2111.0245.2
Ciona sea squirts (Ciona)4
9
232.2222.01.1