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Statistics on ncRNA trees

Since release 58, Compara computes phylogenetic trees for the non-coding RNAs annotating by RFAM. The manuscript is in preparation. More information can be obtained here

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Size of the trees (per root node)

Species# Trees% Trees# Genes% GenesMin # genesMax # genesAverage # genesMin # speciesMax # speciesAverage # speciesAverage # genes per species
Chordates (Chordata)72
12364
16384171.7136543.14.9
Ciona sea squirts (Ciona)4
9
232.2222.01.1
Vertebrates (Vertebrata)86
16497
6396191.836338.77.7
Bony vertebrates (Euteleostomi)227
26358
3399116.126234.94.9
Ray-finned fishes (Neopterygii)2
530
249281265.02106.082.7
Cave fish (Astyanax mexicanus)1
2
222.0111.02.0
Zebrafish (Danio rerio)9
2515
235312279.4111.0279.4
Spotted gar (Lepisosteus oculatus)7
1690
148357241.4111.0241.4
Lobe-finned fish (Sarcopterygii)44
7693
5391174.834824.59.5
Tetrapods (Tetrapoda)20
2076
2294103.825029.15.6
Amniotes (Amniota)94
9804
2394104.324721.36.6
Reptiles and birds (Sauria)1
12
121212.0666.02.0
Anole Lizard (Anolis carolinensis)5
1036
6330207.2111.0207.2
Duck (Anas platyrhynchos)1
2
222.0111.02.0
Mammals (Mammalia)23
2867
2354124.724322.57.0
Marsupials and Placental mammals (Theria)31
4329
2398139.624016.510.6
Placental mammals (Eutheria)437
24484
239956.023910.95.4
Human (Homo sapiens)1
6
666.0111.06.0
Mouse (Mus musculus)2
449
201248224.5111.0224.5
Cat (Felis catus)2
548
170378274.0111.0274.0
Opossum (Monodelphis domestica)1
2
222.0111.02.0
Platypus (Ornithorhynchus anatinus)8
1720
3398215.0111.0215.0
Coelacanth (Latimeria chalumnae)4
1328
194396332.0111.0332.0
Lamprey (Petromyzon marinus)4
1027
238290256.8111.0256.8