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Statistics on ncRNA trees

Since release 58, Compara computes phylogenetic trees for the non-coding RNAs annotating by RFAM. The manuscript is in preparation. More information can be obtained here

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Size of the trees (per root node)

Species# Trees% Trees# Genes% GenesMin # genesMax # genesAverage # genesMin # speciesMax # speciesAverage # speciesAverage # genes per species
Chordates (Chordata)69
11718
16384169.8136544.14.6
Vertebrates (Vertebrata)86
16520
6399192.166338.46.7
Bony vertebrates (Euteleostomi)234
27971
3398119.526234.35.5
Lobe-finned fish (Sarcopterygii)39
7177
5376184.054824.98.9
Coelacanth (Latimeria chalumnae)5
1357
188342271.4111.0271.4
Tetrapods (Tetrapoda)19
2013
2378105.925028.19.5
Amniotes (Amniota)85
7214
235984.924721.14.3
Mammals (Mammalia)21
2504
2362119.224322.86.8
Platypus (Ornithorhynchus anatinus)8
1835
3357229.4111.0229.4
Marsupials and Placental mammals (Theria)28
3705
2399132.324016.610.9
Opossum (Monodelphis domestica)1
2
222.0111.02.0
Placental mammals (Eutheria)435
24679
239856.723910.85.6
Cat (Felis catus)2
562
197365281.0111.0281.0
Mouse (Mus musculus)1
368
368368368.0111.0368.0
Human (Homo sapiens)1
6
666.0111.06.0
Reptiles and birds (Sauria)1
12
121212.0666.02.0
Anole Lizard (Anolis carolinensis)5
1159
6342231.8111.0231.8
Duck (Anas platyrhynchos)1
2
222.0111.02.0
Ray-finned fishes (Neopterygii)2
537
226311268.5222.0134.2
Teleost fishes (Clupeocephala)1
306
306306306.0333.0102.0
Cave fish (Astyanax mexicanus)1
2
222.0111.02.0
Stickleback (Gasterosteus aculeatus)1
191
191191191.0111.0191.0
Zebrafish (Danio rerio)8
2025
191334253.1111.0253.1
Spotted gar (Lepisosteus oculatus)7
1714
200333244.9111.0244.9
Lamprey (Petromyzon marinus)5
1324
238297264.8111.0264.8
Ciona sea squirts (Ciona)4
9
232.2222.01.1