Phylogenetic summary of ncRNA families

This page provides a summary of the Ensembl phylogenetic analysis of ncRNA families. The following views are available:

Size of gene trees (per root node)

Species# Trees% Trees# Genes% GenesMin # genesMax # genesAverage # genesMin # speciesMax # speciesAverage # speciesAverage # genes per species
Animals and Fungi (Opisthokonta)15
89685
2549375979.028428.66.1
Bilateral animals (Bilateria)23
6273
21073272.72168108.91.6
Arthropods and nematodes (Ecdysozoa)2
4
222.0222.01.0
Drosophila melanogaster (Fruit fly) - GCA_000001215.4 [FlyBase annotation] (Drosophila melanogaster)78
425
2485.4111.05.4
Caenorhabditis elegans (Nematode, N2) (Caenorhabditis elegans strain N2)113
647
2295.7111.05.7
Chordates (Chordata)76
130176
5671961712.8317489.83.5
Vertebrates (Vertebrata)160
50637
23540316.5218177.27.0
Lamprey (Petromyzon marinus)14
456
238832.6111.032.6
Jawed vertebrates (Gnathostomata)141
52638
2012205373.37186100.82.9
Bony vertebrates (Euteleostomi)261
68777
26205263.5217967.67.6
Bony fishes (Actinopterygii)3
378
2370126.023915.33.9
Ray-finned fishes (Neopterygii)9
1445
3399160.624416.814.2
Osteoglossocephalai7
2061
9395294.463820.014.8
Asian bonytongue (Scleropages formosus)1
2
222.0111.02.0
Teleost fishes (Clupeocephala)503
21780
239643.32366.411.8
Nile tilapia (Oreochromis niloticus)28
137
2234.9111.04.9
Denticle herring (Denticeps clupeoides reference strain)31
7232
29393233.3111.0233.3
Yellowtail amberjack (Seriola lalandi dorsalis)10
20
222.0111.02.0
Turquoise killifish (Nothobranchius furzeri)1
2
222.0111.02.0
Tongue sole (Cynoglossus semilaevis)1
2
222.0111.02.0
Bicolor damselfish (Stegastes partitus)2
4
222.0111.02.0
Channel bull blenny (Cottoperca gobio)3
540
2376180.0111.0180.0
Rainbow trout (Oncorhynchus mykiss)34
7841
2359230.6111.0230.6
Amazon molly (Poecilia formosa)12
25
232.1111.02.1
Pike-perch (Sander lucioperca)4
21
2125.2111.05.2
Huchen (Hucho hucho)1
2
222.0111.02.0
Turbot (Scophthalmus maximus)37
10782
19396291.4111.0291.4
Clown anemonefish (Amphiprion ocellaris ecotype Okinawa)2
5
232.5111.02.5
Brown trout (Salmo trutta)5
396
238279.2111.079.2
Tiger tail seahorse (Hippocampus comes)3
6
222.0111.02.0
Atlantic herring (Clupea harengus reference strain)2
4
222.0111.02.0
Chinook salmon (Oncorhynchus tshawytscha reference strain)1
396
396396396.0111.0396.0
Northern pike (Esox lucius reference strain)3
510
47377170.0111.0170.0
Goldfish (Carassius auratus)5
1413
127384282.6111.0282.6
Zebrafish (Danio rerio)39
1585
239340.6111.040.6
Zig-zag eel (Mastacembelus armatus)1
2
222.0111.02.0
Indian medaka (Oryzias melastigma)3
7
232.3111.02.3
Pinecone soldierfish (Myripristis murdjan)1
2
222.0111.02.0
Fugu (Takifugu rubripes)2
6
333.0111.03.0
Lumpfish (Cyclopterus lumpus)3
373
2367124.3111.0124.3
Atlantic cod (Gadus morhua)19
854
233744.9111.044.9
Ballan wrasse (Labrus bergylta)1
2
222.0111.02.0
Siamese fighting fish (Betta splendens)1
2
222.0111.02.0
Orange clownfish (Amphiprion percula)1
2
222.0111.02.0
Channel catfish (Ictalurus punctatus strain USDA103-YYmale1)10
1059
2396105.9111.0105.9
Zebra mbuna (Maylandia zebra)1
5
555.0111.05.0
Tetraodon (Tetraodon nigroviridis)13
57
2174.4111.04.4
Atlantic salmon (Salmo salar)632
3892
23806.2111.06.2
Coho salmon (Oncorhynchus kisutch)5
87
25917.4111.017.4
Japanese medaka HdrR (Oryzias latipes)10
70
2187.0111.07.0
Common carp (Cyprinus carpio carpio)2
52
25026.0111.026.0
Spotted gar (Lepisosteus oculatus)7
1473
2385210.4111.0210.4
Reedfish (Erpetoichthys calabaricus)2
4
222.0111.02.0
Lobe-finned fish (Sarcopterygii)42
9717
2772231.4210343.38.9
Tetrapods (Tetrapoda)32
6368
2395199.0211968.25.8
Tropical clawed frog (Xenopus tropicalis)7
338
224048.3111.048.3
Leishan spiny toad (Leptobrachium leishanense)2
4
222.0111.02.0
Amniotes (Amniota)167
33570
22556201.0210846.74.7
Mammals (Mammalia)11
1628
3359148.038754.12.7
Platypus (Ornithorhynchus anatinus)25
5797
2397231.9111.0231.9
Marsupials and Placental mammals (Theria)84
10816
2399128.828935.95.6
Placentals (Eutheria)11519
101342
217738.82884.11.3
Cattle (Bos taurus reference breed)11
30
262.7111.02.7
Blue whale (Balaenoptera musculus)1
3
333.0111.03.0
Vervet-AGM (Chlorocebus sabaeus)19
48
262.5111.02.5
Sperm whale (Physeter catodon)3
7
232.3111.02.3
Golden snub-nosed monkey (Rhinopithecus roxellana)2
4
222.0111.02.0
Sloth (Choloepus hoffmanni)9
21
252.3111.02.3
Leopard (Panthera pardus)1
330
330330330.0111.0330.0
Horse (Equus caballus breed thoroughbred)9
22
242.4111.02.4
Hyrax (Procavia capensis)16
51
273.2111.03.2
Upper Galilee mountains blind mole rat (Nannospalax galili)2
4
222.0111.02.0
Golden Hamster (Mesocricetus auratus)6
12
222.0111.02.0
Dingo (Canis lupus dingo)4
12
253.0111.03.0
Sooty mangabey (Cercocebus atys)4
9
232.2111.02.2
Hedgehog (Erinaceus europaeus)10
24
262.4111.02.4
Black snub-nosed monkey (Rhinopithecus bieti)3
6
222.0111.02.0
Drill (Mandrillus leucophaeus)7
14
222.0111.02.0
Domestic yak (Bos grunniens)2
4
222.0111.02.0
Bushbaby (Otolemur garnettii)10
20
222.0111.02.0
Tree Shrew (Tupaia belangeri)12
41
2103.4111.03.4
Red fox (Vulpes vulpes)1
2
222.0111.02.0
Arabian camel (Camelus dromedarius)1
2
222.0111.02.0
Pika (Ochotona princeps)65
150
272.3111.02.3
Ferret (Mustela putorius furo)4
8
222.0111.02.0
Mouse Lemur (Microcebus murinus)3
6
222.0111.02.0
Alpaca (Vicugna pacos)7
41
2275.9111.05.9
Bolivian squirrel monkey (Saimiri boliviensis boliviensis)2
4
222.0111.02.0
Giant panda (Ailuropoda melanoleuca reference isolate)4
8
222.0111.02.0
White-tufted-ear marmoset (Callithrix jacchus)13
34
292.6111.02.6
Human (Homo sapiens)61
146
282.4111.02.4
Chimpanzee (Pan troglodytes)39
93
262.4111.02.4
Elephant (Loxodonta africana)6
20
263.3111.03.3
Guinea Pig (Cavia porcellus)1
395
395395395.0111.0395.0
Siberian musk deer (Moschus moschiferus)3
6
222.0111.02.0
Squirrel (Ictidomys tridecemlineatus)1
2
222.0111.02.0
Shrew mouse (Mus pahari strain PAHARI_EIJ)1
2
222.0111.02.0
Ryukyu mouse (Mus caroli strain CAROLI_EIJ)1
2
222.0111.02.0
Olive baboon (Papio anubis)2
5
232.5111.02.5
Mouse (Mus musculus reference (CL57BL6) strain)107
302
2472.8111.02.8
Domestic cat (Felis catus reference strain)1
3
333.0111.03.0
Dolphin (Tursiops truncatus)10
35
2103.5111.03.5
Lesser hedgehog tenrec (Echinops telfairi)4
8
222.0111.02.0
Western wild mouse (Mus spretus reference strain)41
128
2283.1111.03.1
Panamanian white-faced capuchin (Cebus imitator)1
2
222.0111.02.0
Megabat (Pteropus vampyrus)20
80
2164.0111.04.0
Chinese hamster CHOK1GS (Cricetulus griseus CHOK1GS_HDv1)1
2
222.0111.02.0
Lesser Egyptian jerboa (Jaculus jaculus)1
2
222.0111.02.0
Pig (Sus scrofa reference breed)5
12
232.4111.02.4
Long-tailed chinchilla (Chinchilla lanigera)5
10
222.0111.02.0
Donkey (Equus asinus reference breed)2
4
222.0111.02.0
Tarsier (Carlito syrichta)6
13
232.2111.02.2
Degu (Octodon degus)1
2
222.0111.02.0
Steppe mouse (Mus spicilegus)1
2
222.0111.02.0
Eurasian red squirrel (Sciurus vulgaris)1
2
222.0111.02.0
Gibbon (Nomascus leucogenys)10
20
222.0111.02.0
Pig-tailed macaque (Macaca nemestrina)1
2
222.0111.02.0
Crab-eating macaque (Macaca fascicularis)1
2
222.0111.02.0
Yarkand deer (Cervus hanglu yarkandensis)4
9
232.2111.02.2
Macaque (Macaca mulatta)1
2
222.0111.02.0
Shrew (Sorex araneus)6
17
262.8111.02.8
Coquerel's sifaka (Propithecus coquereli)4
8
222.0111.02.0
Armadillo (Dasypus novemcinctus)10
45
2154.5111.04.5
Gorilla (Gorilla gorilla gorilla)18
40
262.2111.02.2
Sumatran orangutan (Pongo abelii)4
8
222.0111.02.0
Greater bamboo lemur (Prolemur simus)2
4
222.0111.02.0
Kangaroo rat (Dipodomys ordii)1
2
222.0111.02.0
Hybrid - Bos Indicus (Bos indicus x Bos taurus)2
4
222.0111.02.0
Prairie vole (Microtus ochrogaster)3
6
222.0111.02.0
Ma's night monkey (Aotus nancymaae)4
8
222.0111.02.0
Microbat (Myotis lucifugus)8
20
252.5111.02.5
Dog (Canis lupus familiaris reference breed)21
64
2103.0111.03.0
Marsupials (Marsupialia)55
830
237915.1243.14.1
Diprotodontia6
31
2215.2222.02.6
Common wombat (Vombatus ursinus)38
97
282.6111.02.6
Wallaby (Notamacropus eugenii)2
68
224634.0111.034.0
Opossum (Monodelphis domestica)18
55
283.1111.03.1
Tasmanian devil (Sarcophilus harrisii)1
2
222.0111.02.0
Reptiles and birds (Sauria)310
1049
2123.42123.31.0
Collared flycatcher (Ficedula albicollis)2
4
222.0111.02.0
Common wall lizard (Podarcis muralis)1
2
222.0111.02.0
Medium ground-finch (Geospiza fortis)1
2
222.0111.02.0
Indian cobra (Naja naja)2
4
222.0111.02.0
Three-toed box turtle (Terrapene triunguis)4
8
222.0111.02.0
Chicken (Gallus gallus reference breed)10
64
2166.4111.06.4
Eastern brown snake (Pseudonaja textilis)2
4
222.0111.02.0
Australian saltwater crocodile (Crocodylus porosus)1
262
262262262.0111.0262.0
Chinese softshell turtle (Pelodiscus sinensis)10
26
262.6111.02.6
Coelacanth (Latimeria chalumnae)5
1101
2322220.2111.0220.2
Ciona sea squirts (Ciona)5
65
25113.0222.06.5
C.savignyi (Ciona savignyi)4
25
2186.2111.06.2
C.intestinalis (Ciona intestinalis)12
34
252.8111.02.8
Saccharomyces cerevisiae (Saccharomyces cerevisiae S288C)44
280
2216.4111.06.4