Phylogenetic summary of ncRNA families

This page provides a summary of the Ensembl phylogenetic analysis of ncRNA families. The following views are available:

Size of gene trees (per root node)

Species# Trees% Trees# Genes% GenesMin # genesMax # genesAverage # genesMin # speciesMax # speciesAverage # speciesAverage # genes per species
Animals and Fungi (Opisthokonta)15
141107
2924279407.1211227.62.6
Bilateral animals (Bilateria)25
8374
21567335.02176121.81.5
Arthropods and nematodes (Ecdysozoa)2
4
222.0222.01.0
Drosophila melanogaster - (Fruit fly) (Drosophila melanogaster)78
425
2485.4111.05.4
Caenorhabditis elegans (Nematode, N2) (Caenorhabditis elegans strain N2)113
647
2295.7111.05.7
Chordates (Chordata)87
182209
5874472094.4519299.72.8
Ciona sea squirts (Ciona)3
6
222.0222.01.0
C.savignyi (Ciona savignyi)4
25
2186.2111.06.2
C.intestinalis (Ciona intestinalis)12
34
252.8111.02.8
Vertebrates (Vertebrata)201
69326
25023344.9219185.34.5
Lamprey (Petromyzon marinus)15
755
239050.3111.050.3
Jawed vertebrates (Gnathostomata)166
81328
2922448489.911193103.92.6
Elephant shark (Callorhinchus milii)1
2
222.0111.02.0
Bony vertebrates (Euteleostomi)411
112952
26341274.8218075.65.6
Lobe-finned fish (Sarcopterygii)60
17250
21452287.5211864.47.1
Tetrapods (Tetrapoda)41
10227
2398249.4212281.56.2
Amniotes (Amniota)288
69488
23200241.3211564.03.5
Mammals (Mammalia)21
5121
3435243.938960.94.2
Platypus (Ornithorhynchus anatinus)26
5880
2392226.2111.0226.2
Marsupials and Placental mammals (Theria)83
10461
2398126.029243.92.9
Placentals (Eutheria)11699
148860
2339712.72884.61.4
Upper Galilee mountains blind mole rat (Nannospalax galili)2
4
222.0111.02.0
Bolivian squirrel monkey (Saimiri boliviensis boliviensis)2
4
222.0111.02.0
Armadillo (Dasypus novemcinctus)10
45
2154.5111.04.5
Squirrel (Ictidomys tridecemlineatus)1
2
222.0111.02.0
Arabian camel (Camelus dromedarius)1
2
222.0111.02.0
Western wild mouse (Mus spretus reference strain)41
128
2283.1111.03.1
White-tufted-ear marmoset (Callithrix jacchus)14
380
234627.1111.027.1
Dingo (Canis lupus dingo)4
12
253.0111.03.0
Macaque (Macaca mulatta)1
2
222.0111.02.0
Degu (Octodon degus)1
2
222.0111.02.0
Hedgehog (Erinaceus europaeus)10
24
262.4111.02.4
Microbat (Myotis lucifugus)8
20
252.5111.02.5
Pig (Sus scrofa reference breed)5
12
232.4111.02.4
Shrew mouse (Mus pahari strain PAHARI_EIJ)1
2
222.0111.02.0
Ferret (Mustela putorius furo)4
8
222.0111.02.0
Domestic yak (Bos grunniens)2
4
222.0111.02.0
Kangaroo rat (Dipodomys ordii)1
2
222.0111.02.0
Dog (Canis lupus familiaris reference breed)21
64
2103.0111.03.0
Olive baboon (Papio anubis)2
5
232.5111.02.5
Greater bamboo lemur (Prolemur simus)2
4
222.0111.02.0
Panamanian white-faced capuchin (Cebus imitator)1
2
222.0111.02.0
Blue whale (Balaenoptera musculus)1
3
333.0111.03.0
Steppe mouse (Mus spicilegus)1
2
222.0111.02.0
Hyrax (Procavia capensis)16
51
273.2111.03.2
Sloth (Choloepus hoffmanni)9
21
252.3111.02.3
Black snub-nosed monkey (Rhinopithecus bieti)3
6
222.0111.02.0
Tarsier (Carlito syrichta)6
13
232.2111.02.2
Drill (Mandrillus leucophaeus)7
14
222.0111.02.0
Megabat (Pteropus vampyrus)20
80
2164.0111.04.0
Chimpanzee (Pan troglodytes)39
93
262.4111.02.4
Gibbon (Nomascus leucogenys)10
20
222.0111.02.0
Sperm whale (Physeter macrocephalus)3
7
232.3111.02.3
Pig-tailed macaque (Macaca nemestrina)1
2
222.0111.02.0
Sheep (Ovis aries reference breed)11
22
222.0111.02.0
Norway rat - BN/NHsdMcwi (Rattus norvegicus reference strain)1
2
222.0111.02.0
Human (Homo sapiens)61
146
282.4111.02.4
Domestic cat (Felis catus reference breed)1
3
333.0111.03.0
Alpaca (Vicugna pacos)7
41
2275.9111.05.9
Mouse Lemur (Microcebus murinus)3
6
222.0111.02.0
Donkey (Equus asinus reference breed)2
4
222.0111.02.0
Gorilla (Gorilla gorilla gorilla)18
40
262.2111.02.2
Coquerel's sifaka (Propithecus coquereli)4
8
222.0111.02.0
Long-tailed chinchilla (Chinchilla lanigera)5
10
222.0111.02.0
Ryukyu mouse (Mus caroli strain CAROLI_EIJ)1
2
222.0111.02.0
Prairie vole (Microtus ochrogaster)3
6
222.0111.02.0
Crab-eating macaque (Macaca fascicularis)1
2
222.0111.02.0
Dolphin (Tursiops truncatus)10
35
2103.5111.03.5
Giant panda (Ailuropoda melanoleuca reference isolate)4
8
222.0111.02.0
Horse (Equus caballus breed thoroughbred)9
22
242.4111.02.4
Sumatran orangutan (Pongo abelii)4
8
222.0111.02.0
Tree Shrew (Tupaia belangeri)12
41
2103.4111.03.4
Golden Hamster (Mesocricetus auratus)6
12
222.0111.02.0
Shrew (Sorex araneus)6
17
262.8111.02.8
Lesser Egyptian jerboa (Jaculus jaculus)1
2
222.0111.02.0
Golden snub-nosed monkey (Rhinopithecus roxellana)2
4
222.0111.02.0
Cattle (Bos taurus reference breed)8
21
262.6111.02.6
Vervet-AGM (Chlorocebus sabaeus)19
48
262.5111.02.5
Red fox (Vulpes vulpes)1
2
222.0111.02.0
Sooty mangabey (Cercocebus atys)4
9
232.2111.02.2
Eurasian red squirrel (Sciurus vulgaris)1
2
222.0111.02.0
Bushbaby (Otolemur garnettii)10
20
222.0111.02.0
Hybrid - Bos Indicus (Bos indicus x Bos taurus)2
4
222.0111.02.0
Yarkand deer (Cervus hanglu yarkandensis)4
9
232.2111.02.2
Mouse (Mus musculus reference (CL57BL6) strain)107
302
2472.8111.02.8
Elephant (Loxodonta africana)6
20
263.3111.03.3
Lesser hedgehog tenrec (Echinops telfairi)4
8
222.0111.02.0
Pika (Ochotona princeps)65
150
272.3111.02.3
Siberian musk deer (Moschus moschiferus)3
6
222.0111.02.0
Ma's night monkey (Aotus nancymaae)4
8
222.0111.02.0
Marsupials (Marsupialia)56
1259
235522.5243.15.8
Diprotodontia5
10
222.0222.01.0
Common wombat (Vombatus ursinus)38
97
282.6111.02.6
Wallaby (Notamacropus eugenii)2
68
224634.0111.034.0
Opossum (Monodelphis domestica)18
55
283.1111.03.1
Tasmanian devil (Sarcophilus harrisii)1
2
222.0111.02.0
Reptiles and birds (Sauria)314
1962
23686.22273.41.5
Indian cobra (Naja naja)2
4
222.0111.02.0
Chicken (Gallus gallus reference breed)10
64
2166.4111.06.4
Medium ground-finch (Geospiza fortis)1
2
222.0111.02.0
Chinese softshell turtle (Pelodiscus sinensis)10
26
262.6111.02.6
Three-toed box turtle (Terrapene triunguis)4
8
222.0111.02.0
Common wall lizard (Podarcis muralis)1
2
222.0111.02.0
Eastern brown snake (Pseudonaja textilis)2
4
222.0111.02.0
Collared flycatcher (Ficedula albicollis)2
4
222.0111.02.0
Leishan spiny toad (Leptobrachium leishanense)2
4
222.0111.02.0
Tropical clawed frog (Xenopus tropicalis)6
98
25016.3111.016.3
Coelacanth (Latimeria chalumnae)2
235
2233117.5111.0117.5
Bony fishes (Actinopterygii)5
583
2388116.626120.410.9
Reedfish (Erpetoichthys calabaricus)2
4
222.0111.02.0
Ray-finned fishes (Neopterygii)9
2428
35395269.836432.922.0
Spotted gar (Lepisosteus oculatus)6
1353
2390225.5111.0225.5
Osteoglossocephalai10
2688
11379268.835126.524.7
Teleost fishes (Clupeocephala)507
22469
239844.32546.710.2
Turbot (Scophthalmus maximus)41
10848
51390264.6111.0264.6
Indian medaka (Oryzias melastigma)3
7
232.3111.02.3
Clown anemonefish (Amphiprion ocellaris ecotype Okinawa)2
5
232.5111.02.5
Channel catfish (Ictalurus punctatus strain USDA103-YYmale1)10
1139
2386113.9111.0113.9
Pike-perch (Sander lucioperca)4
21
2125.2111.05.2
Zebra mbuna (Maylandia zebra)1
5
555.0111.05.0
Yellowtail amberjack (Seriola lalandi dorsalis)10
20
222.0111.02.0
Orange clownfish (Amphiprion percula)1
2
222.0111.02.0
Ballan wrasse (Labrus bergylta)1
2
222.0111.02.0
Nile tilapia (Oreochromis niloticus)28
137
2234.9111.04.9
Tetraodon (Tetraodon nigroviridis)13
57
2174.4111.04.4
Atlantic herring (Clupea harengus reference strain)2
4
222.0111.02.0
Denticle herring (Denticeps clupeoides reference strain)28
7695
26398274.8111.0274.8
Bicolor damselfish (Stegastes partitus)2
4
222.0111.02.0
Coho salmon (Oncorhynchus kisutch)7
514
221473.4111.073.4
Amazon molly (Poecilia formosa)12
25
232.1111.02.1
Japanese medaka HdrR (Oryzias latipes)10
70
2187.0111.07.0
Brown trout (Salmo trutta)4
14
273.5111.03.5
Siamese fighting fish (Betta splendens)1
2
222.0111.02.0
Tongue sole (Cynoglossus semilaevis)1
2
222.0111.02.0
Zebrafish (Danio rerio)39
1337
238034.3111.034.3
Zig-zag eel (Mastacembelus armatus)1
2
222.0111.02.0
Common carp (Cyprinus carpio carpio)2
52
25026.0111.026.0
Chinook salmon (Oncorhynchus tshawytscha reference strain)1
396
396396396.0111.0396.0
Pinecone soldierfish (Myripristis murdjan)1
2
222.0111.02.0
Rainbow trout (Oncorhynchus mykiss)32
7808
2396244.0111.0244.0
Tiger tail seahorse (Hippocampus comes)3
6
222.0111.02.0
Northern pike (Esox lucius reference strain)1
395
395395395.0111.0395.0
Atlantic salmon (Salmo salar)632
3989
23806.3111.06.3
Goldfish (Carassius auratus)4
1379
246388344.8111.0344.8
Atlantic cod (Gadus morhua)19
750
239739.5111.039.5
Channel bull blenny (Cottoperca gobio)2
387
2385193.5111.0193.5
Fugu (Takifugu rubripes)2
6
333.0111.03.0
Lumpfish (Cyclopterus lumpus)4
446
2379111.5111.0111.5
Turquoise killifish (Nothobranchius furzeri)1
2
222.0111.02.0
Huchen (Hucho hucho)1
2
222.0111.02.0
Asian bonytongue (Scleropages formosus)1
2
222.0111.02.0
Saccharomyces cerevisiae (Saccharomyces cerevisiae S288C)44
280
2216.4111.06.4