Phylogenetic summary of ncRNA families

This page provides a summary of the Ensembl phylogenetic analysis of ncRNA families. The following views are available:

Size of gene trees (per root node)

Species# Trees% Trees# Genes% GenesMin # genesMax # genesAverage # genesMin # speciesMax # speciesAverage # speciesAverage # genes per species
Animals and Fungi (Opisthokonta)15
89685
2549375979.028428.66.1
Saccharomyces cerevisiae (Saccharomyces cerevisiae S288C)44
280
2216.4111.06.4
Bilateral animals (Bilateria)23
6273
21073272.72168108.91.6
Arthropods and nematodes (Ecdysozoa)2
4
222.0222.01.0
Drosophila melanogaster (Fruit fly) - GCA_000001215.4 [FlyBase annotation] (Drosophila melanogaster)78
425
2485.4111.05.4
Caenorhabditis elegans (Nematode, N2) (Caenorhabditis elegans strain N2)113
647
2295.7111.05.7
Chordates (Chordata)76
130176
5671961712.8317489.83.5
Vertebrates (Vertebrata)160
50637
23540316.5218177.27.0
Jawed vertebrates (Gnathostomata)141
52638
2012205373.37186100.82.9
Bony vertebrates (Euteleostomi)261
68777
26205263.5217967.67.6
Bony fishes (Actinopterygii)3
378
2370126.023915.33.9
Ray-finned fishes (Neopterygii)9
1445
3399160.624416.814.2
Osteoglossocephalai7
2061
9395294.463820.014.8
Asian bonytongue (Scleropages formosus)1
2
222.0111.02.0
Teleost fishes (Clupeocephala)503
21780
239643.32366.411.8
Turbot (Scophthalmus maximus)37
10782
19396291.4111.0291.4
Rainbow trout (Oncorhynchus mykiss)34
7841
2359230.6111.0230.6
Huchen (Hucho hucho)1
2
222.0111.02.0
Zig-zag eel (Mastacembelus armatus)1
2
222.0111.02.0
Japanese medaka HdrR (Oryzias latipes)10
70
2187.0111.07.0
Ballan wrasse (Labrus bergylta)1
2
222.0111.02.0
Coho salmon (Oncorhynchus kisutch)5
87
25917.4111.017.4
Siamese fighting fish (Betta splendens)1
2
222.0111.02.0
Nile tilapia (Oreochromis niloticus)28
137
2234.9111.04.9
Atlantic salmon (Salmo salar)632
3892
23806.2111.06.2
Amazon molly (Poecilia formosa)12
25
232.1111.02.1
Zebrafish (Danio rerio)39
1585
239340.6111.040.6
Zebra mbuna (Maylandia zebra)1
5
555.0111.05.0
Yellowtail amberjack (Seriola lalandi dorsalis)10
20
222.0111.02.0
Bicolor damselfish (Stegastes partitus)2
4
222.0111.02.0
Chinook salmon (Oncorhynchus tshawytscha reference strain)1
396
396396396.0111.0396.0
Brown trout (Salmo trutta)5
396
238279.2111.079.2
Goldfish (Carassius auratus)5
1413
127384282.6111.0282.6
Clown anemonefish (Amphiprion ocellaris ecotype Okinawa)2
5
232.5111.02.5
Orange clownfish (Amphiprion percula)1
2
222.0111.02.0
Tongue sole (Cynoglossus semilaevis)1
2
222.0111.02.0
Atlantic cod (Gadus morhua)19
854
233744.9111.044.9
Northern pike (Esox lucius reference strain)3
510
47377170.0111.0170.0
Tetraodon (Tetraodon nigroviridis)13
57
2174.4111.04.4
Channel bull blenny (Cottoperca gobio)3
540
2376180.0111.0180.0
Denticle herring (Denticeps clupeoides reference strain)31
7232
29393233.3111.0233.3
Channel catfish (Ictalurus punctatus strain USDA103-YYmale1)10
1059
2396105.9111.0105.9
Turquoise killifish (Nothobranchius furzeri)1
2
222.0111.02.0
Indian medaka (Oryzias melastigma)3
7
232.3111.02.3
Atlantic herring (Clupea harengus reference strain)2
4
222.0111.02.0
Lumpfish (Cyclopterus lumpus)3
373
2367124.3111.0124.3
Common carp (Cyprinus carpio carpio)2
52
25026.0111.026.0
Tiger tail seahorse (Hippocampus comes)3
6
222.0111.02.0
Pike-perch (Sander lucioperca)4
21
2125.2111.05.2
Pinecone soldierfish (Myripristis murdjan)1
2
222.0111.02.0
Fugu (Takifugu rubripes)2
6
333.0111.03.0
Spotted gar (Lepisosteus oculatus)7
1473
2385210.4111.0210.4
Reedfish (Erpetoichthys calabaricus)2
4
222.0111.02.0
Lobe-finned fish (Sarcopterygii)42
9717
2772231.4210343.38.9
Tetrapods (Tetrapoda)32
6368
2395199.0211968.25.8
Leishan spiny toad (Leptobrachium leishanense)2
4
222.0111.02.0
Tropical clawed frog (Xenopus tropicalis)7
338
224048.3111.048.3
Amniotes (Amniota)167
33570
22556201.0210846.74.7
Mammals (Mammalia)11
1628
3359148.038754.12.7
Marsupials and Placental mammals (Theria)84
10816
2399128.828935.95.6
Placentals (Eutheria)11519
101342
217738.82884.11.3
Yarkand deer (Cervus hanglu yarkandensis)4
9
232.2111.02.2
Drill (Mandrillus leucophaeus)7
14
222.0111.02.0
Gibbon (Nomascus leucogenys)10
20
222.0111.02.0
Greater bamboo lemur (Prolemur simus)2
4
222.0111.02.0
Dolphin (Tursiops truncatus)10
35
2103.5111.03.5
Ferret (Mustela putorius furo)4
8
222.0111.02.0
Vervet-AGM (Chlorocebus sabaeus)19
48
262.5111.02.5
Giant panda (Ailuropoda melanoleuca reference isolate)4
8
222.0111.02.0
Mouse Lemur (Microcebus murinus)3
6
222.0111.02.0
Domestic yak (Bos grunniens)2
4
222.0111.02.0
Lesser hedgehog tenrec (Echinops telfairi)4
8
222.0111.02.0
Coquerel's sifaka (Propithecus coquereli)4
8
222.0111.02.0
Siberian musk deer (Moschus moschiferus)3
6
222.0111.02.0
Hyrax (Procavia capensis)16
51
273.2111.03.2
Long-tailed chinchilla (Chinchilla lanigera)5
10
222.0111.02.0
Leopard (Panthera pardus)1
330
330330330.0111.0330.0
Microbat (Myotis lucifugus)8
20
252.5111.02.5
Western wild mouse (Mus spretus reference strain)41
128
2283.1111.03.1
Mouse (Mus musculus reference (CL57BL6) strain)107
302
2472.8111.02.8
Macaque (Macaca mulatta)1
2
222.0111.02.0
Chinese hamster CHOK1GS (Cricetulus griseus CHOK1GS_HDv1)1
2
222.0111.02.0
Shrew (Sorex araneus)6
17
262.8111.02.8
Pig (Sus scrofa reference breed)5
12
232.4111.02.4
Bushbaby (Otolemur garnettii)10
20
222.0111.02.0
Prairie vole (Microtus ochrogaster)3
6
222.0111.02.0
Sooty mangabey (Cercocebus atys)4
9
232.2111.02.2
Dingo (Canis lupus dingo)4
12
253.0111.03.0
White-tufted-ear marmoset (Callithrix jacchus)13
34
292.6111.02.6
Golden snub-nosed monkey (Rhinopithecus roxellana)2
4
222.0111.02.0
Megabat (Pteropus vampyrus)20
80
2164.0111.04.0
Domestic cat (Felis catus reference strain)1
3
333.0111.03.0
Eurasian red squirrel (Sciurus vulgaris)1
2
222.0111.02.0
Cattle (Bos taurus reference breed)11
30
262.7111.02.7
Black snub-nosed monkey (Rhinopithecus bieti)3
6
222.0111.02.0
Sloth (Choloepus hoffmanni)9
21
252.3111.02.3
Panamanian white-faced capuchin (Cebus imitator)1
2
222.0111.02.0
Horse (Equus caballus breed thoroughbred)9
22
242.4111.02.4
Red fox (Vulpes vulpes)1
2
222.0111.02.0
Upper Galilee mountains blind mole rat (Nannospalax galili)2
4
222.0111.02.0
Pika (Ochotona princeps)65
150
272.3111.02.3
Guinea Pig (Cavia porcellus)1
395
395395395.0111.0395.0
Crab-eating macaque (Macaca fascicularis)1
2
222.0111.02.0
Degu (Octodon degus)1
2
222.0111.02.0
Tree Shrew (Tupaia belangeri)12
41
2103.4111.03.4
Sperm whale (Physeter catodon)3
7
232.3111.02.3
Ma's night monkey (Aotus nancymaae)4
8
222.0111.02.0
Donkey (Equus asinus reference breed)2
4
222.0111.02.0
Dog (Canis lupus familiaris reference breed)21
64
2103.0111.03.0
Alpaca (Vicugna pacos)7
41
2275.9111.05.9
Golden Hamster (Mesocricetus auratus)6
12
222.0111.02.0
Human (Homo sapiens)61
146
282.4111.02.4
Lesser Egyptian jerboa (Jaculus jaculus)1
2
222.0111.02.0
Arabian camel (Camelus dromedarius)1
2
222.0111.02.0
Tarsier (Carlito syrichta)6
13
232.2111.02.2
Hybrid - Bos Indicus (Bos indicus x Bos taurus)2
4
222.0111.02.0
Squirrel (Ictidomys tridecemlineatus)1
2
222.0111.02.0
Gorilla (Gorilla gorilla gorilla)18
40
262.2111.02.2
Elephant (Loxodonta africana)6
20
263.3111.03.3
Ryukyu mouse (Mus caroli strain CAROLI_EIJ)1
2
222.0111.02.0
Bolivian squirrel monkey (Saimiri boliviensis boliviensis)2
4
222.0111.02.0
Hedgehog (Erinaceus europaeus)10
24
262.4111.02.4
Steppe mouse (Mus spicilegus)1
2
222.0111.02.0
Armadillo (Dasypus novemcinctus)10
45
2154.5111.04.5
Sumatran orangutan (Pongo abelii)4
8
222.0111.02.0
Chimpanzee (Pan troglodytes)39
93
262.4111.02.4
Blue whale (Balaenoptera musculus)1
3
333.0111.03.0
Shrew mouse (Mus pahari strain PAHARI_EIJ)1
2
222.0111.02.0
Pig-tailed macaque (Macaca nemestrina)1
2
222.0111.02.0
Olive baboon (Papio anubis)2
5
232.5111.02.5
Kangaroo rat (Dipodomys ordii)1
2
222.0111.02.0
Marsupials (Marsupialia)55
830
237915.1243.14.1
Diprotodontia6
31
2215.2222.02.6
Common wombat (Vombatus ursinus)38
97
282.6111.02.6
Wallaby (Notamacropus eugenii)2
68
224634.0111.034.0
Opossum (Monodelphis domestica)18
55
283.1111.03.1
Tasmanian devil (Sarcophilus harrisii)1
2
222.0111.02.0
Platypus (Ornithorhynchus anatinus)25
5797
2397231.9111.0231.9
Reptiles and birds (Sauria)310
1049
2123.42123.31.0
Common wall lizard (Podarcis muralis)1
2
222.0111.02.0
Three-toed box turtle (Terrapene triunguis)4
8
222.0111.02.0
Collared flycatcher (Ficedula albicollis)2
4
222.0111.02.0
Chinese softshell turtle (Pelodiscus sinensis)10
26
262.6111.02.6
Medium ground-finch (Geospiza fortis)1
2
222.0111.02.0
Indian cobra (Naja naja)2
4
222.0111.02.0
Chicken (Gallus gallus reference breed)10
64
2166.4111.06.4
Australian saltwater crocodile (Crocodylus porosus)1
262
262262262.0111.0262.0
Eastern brown snake (Pseudonaja textilis)2
4
222.0111.02.0
Coelacanth (Latimeria chalumnae)5
1101
2322220.2111.0220.2
Lamprey (Petromyzon marinus)14
456
238832.6111.032.6
Ciona sea squirts (Ciona)5
65
25113.0222.06.5
C.intestinalis (Ciona intestinalis)12
34
252.8111.02.8
C.savignyi (Ciona savignyi)4
25
2186.2111.06.2