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Statistics on ncRNA trees

Since release 58, Compara computes phylogenetic trees for the non-coding RNAs annotating by RFAM. The manuscript is in preparation. More information can be obtained here

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Size of the trees (per root node)

Species# Trees% Trees# Genes% GenesMin # genesMax # genesAverage # genesMin # speciesMax # speciesAverage # speciesAverage # genes per species
Chordates (Chordata)71
12206
16386171.9136543.64.8
Ciona sea squirts (Ciona)4
9
232.2222.01.1
Vertebrates (Vertebrata)82
15130
6388184.536339.26.5
Lamprey (Petromyzon marinus)4
974
220274243.5111.0243.5
Bony vertebrates (Euteleostomi)234
27352
3392116.926134.75.1
Ray-finned fishes (Neopterygii)1
257
257257257.0222.0128.5
Zebrafish (Danio rerio)10
2564
210323256.4111.0256.4
Cave fish (Astyanax mexicanus)1
2
222.0111.02.0
Stickleback (Gasterosteus aculeatus)1
383
383383383.0111.0383.0
Spotted gar (Lepisosteus oculatus)7
1714
181306244.9111.0244.9
Lobe-finned fish (Sarcopterygii)41
7694
5383187.754824.79.5
Coelacanth (Latimeria chalumnae)6
1513
196341252.2111.0252.2
Tetrapods (Tetrapoda)20
2246
2369112.325029.84.3
Amniotes (Amniota)89
8053
239790.524721.55.6
Reptiles and birds (Sauria)1
12
121212.0666.02.0
Duck (Anas platyrhynchos)1
2
222.0111.02.0
Anole Lizard (Anolis carolinensis)5
951
6332190.2111.0190.2
Mammals (Mammalia)22
2673
2379121.524222.86.6
Marsupials and Placental mammals (Theria)34
5202
2398153.024016.810.5
Placental mammals (Eutheria)441
25572
239358.023911.05.6
Mouse (Mus musculus)1
342
342342342.0111.0342.0
Cat (Felis catus)2
515
144371257.5111.0257.5
Human (Homo sapiens)1
6
666.0111.06.0
Opossum (Monodelphis domestica)1
2
222.0111.02.0
Platypus (Ornithorhynchus anatinus)9
1878
3378208.7111.0208.7