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Statistics on ncRNA trees

Since release 58, Compara computes phylogenetic trees for the non-coding RNAs annotating by RFAM. The manuscript is in preparation. More information can be obtained here

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Size of the trees (per root node)

Species# Trees% Trees# Genes% GenesMin # genesMax # genesAverage # genesMin # speciesMax # speciesAverage # speciesAverage # genes per species
Chordates (Chordata)69
10118
12363146.6115636.94.9
Ciona sea squirts (Ciona)4
9
232.2222.01.1
Vertebrates (Vertebrata)82
14396
5388175.635433.78.3
Bony vertebrates (Euteleostomi)185
18593
3397100.525233.85.1
Stickleback (Gasterosteus aculeatus)1
291
291291291.0111.0291.0
Zebrafish (Danio rerio)10
2643
140387264.3111.0264.3
Lobe-finned fish (Sarcopterygii)54
10695
4397198.144522.311.0
Tetrapods (Tetrapoda)21
2208
2311105.124627.35.2
Amniotes (Amniota)95
9253
237797.424317.67.4
Reptiles and birds (Sauria)1
6
666.0555.01.2
Anole Lizard (Anolis carolinensis)3
478
6262159.3111.0159.3
Mammals (Mammalia)29
3158
2391108.924121.96.5
Platypus (Ornithorhynchus anatinus)7
1612
3399230.3111.0230.3
Marsupials and Placental mammals (Theria)34
4480
2385131.823916.110.6
Placental mammals (Eutheria)427
22006
239551.52389.65.6
Cat (Felis catus)2
566
183383283.0111.0283.0
Human (Homo sapiens)1
6
666.0111.06.0
Mouse (Mus musculus)2
492
215277246.0111.0246.0
Opossum (Monodelphis domestica)1
2
222.0111.02.0
Coelacanth (Latimeria chalumnae)4
939
156291234.8111.0234.8
Lamprey (Petromyzon marinus)4
918
160260229.5111.0229.5