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Statistics on ncRNA trees

Since release 58, Compara computes phylogenetic trees for the non-coding RNAs annotating by RFAM. The manuscript is in preparation. More information can be obtained here

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Size of the trees (per root node)

Species# Trees% Trees# Genes% GenesMin # genesMax # genesAverage # genesMin # speciesMax # speciesAverage # speciesAverage # genes per species
Chordates (Chordata)71
12206
16386171.9136543.64.8
Vertebrates (Vertebrata)82
15130
6388184.536339.26.5
Lamprey (Petromyzon marinus)4
974
220274243.5111.0243.5
Bony vertebrates (Euteleostomi)234
27352
3392116.926134.75.1
Lobe-finned fish (Sarcopterygii)41
7694
5383187.754824.79.5
Tetrapods (Tetrapoda)20
2246
2369112.325029.84.3
Amniotes (Amniota)89
8053
239790.524721.55.6
Reptiles and birds (Sauria)1
12
121212.0666.02.0
Anole Lizard (Anolis carolinensis)5
951
6332190.2111.0190.2
Duck (Anas platyrhynchos)1
2
222.0111.02.0
Mammals (Mammalia)22
2673
2379121.524222.86.6
Platypus (Ornithorhynchus anatinus)9
1878
3378208.7111.0208.7
Marsupials and Placental mammals (Theria)34
5202
2398153.024016.810.5
Placental mammals (Eutheria)441
25572
239358.023911.05.6
Cat (Felis catus)2
515
144371257.5111.0257.5
Mouse (Mus musculus)1
342
342342342.0111.0342.0
Human (Homo sapiens)1
6
666.0111.06.0
Opossum (Monodelphis domestica)1
2
222.0111.02.0
Coelacanth (Latimeria chalumnae)6
1513
196341252.2111.0252.2
Ray-finned fishes (Neopterygii)1
257
257257257.0222.0128.5
Zebrafish (Danio rerio)10
2564
210323256.4111.0256.4
Stickleback (Gasterosteus aculeatus)1
383
383383383.0111.0383.0
Cave fish (Astyanax mexicanus)1
2
222.0111.02.0
Spotted gar (Lepisosteus oculatus)7
1714
181306244.9111.0244.9
Ciona sea squirts (Ciona)4
9
232.2222.01.1