Phylogenetic summary of ncRNA families

This page provides a summary of the Ensembl phylogenetic analysis of ncRNA families. The following views are available:

Size of gene trees (per root node)

Species# Trees% Trees# Genes% GenesMin # genesMax # genesAverage # genesMin # speciesMax # speciesAverage # speciesAverage # genes per species
Animals and Fungi (Opisthokonta)15
141107
2924279407.1211227.62.6
Bilateral animals (Bilateria)25
8374
21567335.02176121.81.5
Chordates (Chordata)87
182209
5874472094.4519299.72.8
Ciona sea squirts (Ciona)3
6
222.0222.01.0
C.intestinalis (Ciona intestinalis)12
34
252.8111.02.8
C.savignyi (Ciona savignyi)4
25
2186.2111.06.2
Vertebrates (Vertebrata)201
69326
25023344.9219185.34.5
Lamprey (Petromyzon marinus)15
755
239050.3111.050.3
Jawed vertebrates (Gnathostomata)166
81328
2922448489.911193103.92.6
Bony vertebrates (Euteleostomi)411
112952
26341274.8218075.65.6
Bony fishes (Actinopterygii)5
583
2388116.626120.410.9
Reedfish (Erpetoichthys calabaricus)2
4
222.0111.02.0
Ray-finned fishes (Neopterygii)9
2428
35395269.836432.922.0
Osteoglossocephalai10
2688
11379268.835126.524.7
Teleost fishes (Clupeocephala)507
22469
239844.32546.710.2
Tetraodon (Tetraodon nigroviridis)13
57
2174.4111.04.4
Turbot (Scophthalmus maximus)41
10848
51390264.6111.0264.6
Indian medaka (Oryzias melastigma)3
7
232.3111.02.3
Clown anemonefish (Amphiprion ocellaris ecotype Okinawa)2
5
232.5111.02.5
Bicolor damselfish (Stegastes partitus)2
4
222.0111.02.0
Atlantic cod (Gadus morhua)19
750
239739.5111.039.5
Zebrafish (Danio rerio)39
1337
238034.3111.034.3
Brown trout (Salmo trutta)4
14
273.5111.03.5
Channel bull blenny (Cottoperca gobio)2
387
2385193.5111.0193.5
Northern pike (Esox lucius reference strain)1
395
395395395.0111.0395.0
Zebra mbuna (Maylandia zebra)1
5
555.0111.05.0
Pinecone soldierfish (Myripristis murdjan)1
2
222.0111.02.0
Yellowtail amberjack (Seriola lalandi dorsalis)10
20
222.0111.02.0
Ballan wrasse (Labrus bergylta)1
2
222.0111.02.0
Huchen (Hucho hucho)1
2
222.0111.02.0
Pike-perch (Sander lucioperca)4
21
2125.2111.05.2
Nile tilapia (Oreochromis niloticus)28
137
2234.9111.04.9
Goldfish (Carassius auratus)4
1379
246388344.8111.0344.8
Channel catfish (Ictalurus punctatus strain USDA103-YYmale1)10
1139
2386113.9111.0113.9
Coho salmon (Oncorhynchus kisutch)7
514
221473.4111.073.4
Atlantic herring (Clupea harengus reference strain)2
4
222.0111.02.0
Common carp (Cyprinus carpio carpio)2
52
25026.0111.026.0
Turquoise killifish (Nothobranchius furzeri)1
2
222.0111.02.0
Zig-zag eel (Mastacembelus armatus)1
2
222.0111.02.0
Orange clownfish (Amphiprion percula)1
2
222.0111.02.0
Lumpfish (Cyclopterus lumpus)4
446
2379111.5111.0111.5
Siamese fighting fish (Betta splendens)1
2
222.0111.02.0
Tiger tail seahorse (Hippocampus comes)3
6
222.0111.02.0
Japanese medaka HdrR (Oryzias latipes)10
70
2187.0111.07.0
Rainbow trout (Oncorhynchus mykiss)32
7808
2396244.0111.0244.0
Atlantic salmon (Salmo salar)632
3989
23806.3111.06.3
Denticle herring (Denticeps clupeoides reference strain)28
7695
26398274.8111.0274.8
Chinook salmon (Oncorhynchus tshawytscha reference strain)1
396
396396396.0111.0396.0
Tongue sole (Cynoglossus semilaevis)1
2
222.0111.02.0
Amazon molly (Poecilia formosa)12
25
232.1111.02.1
Fugu (Takifugu rubripes)2
6
333.0111.03.0
Asian bonytongue (Scleropages formosus)1
2
222.0111.02.0
Spotted gar (Lepisosteus oculatus)6
1353
2390225.5111.0225.5
Lobe-finned fish (Sarcopterygii)60
17250
21452287.5211864.47.1
Tetrapods (Tetrapoda)41
10227
2398249.4212281.56.2
Tropical clawed frog (Xenopus tropicalis)6
98
25016.3111.016.3
Leishan spiny toad (Leptobrachium leishanense)2
4
222.0111.02.0
Amniotes (Amniota)288
69488
23200241.3211564.03.5
Mammals (Mammalia)21
5121
3435243.938960.94.2
Marsupials and Placental mammals (Theria)83
10461
2398126.029243.92.9
Placentals (Eutheria)11699
148860
2339712.72884.61.4
Siberian musk deer (Moschus moschiferus)3
6
222.0111.02.0
Squirrel (Ictidomys tridecemlineatus)1
2
222.0111.02.0
Dolphin (Tursiops truncatus)10
35
2103.5111.03.5
Tarsier (Carlito syrichta)6
13
232.2111.02.2
Ferret (Mustela putorius furo)4
8
222.0111.02.0
Panamanian white-faced capuchin (Cebus imitator)1
2
222.0111.02.0
Elephant (Loxodonta africana)6
20
263.3111.03.3
Horse (Equus caballus breed thoroughbred)9
22
242.4111.02.4
Macaque (Macaca mulatta)1
2
222.0111.02.0
Alpaca (Vicugna pacos)7
41
2275.9111.05.9
Sooty mangabey (Cercocebus atys)4
9
232.2111.02.2
Dog (Canis lupus familiaris reference breed)21
64
2103.0111.03.0
Domestic cat (Felis catus reference breed)1
3
333.0111.03.0
Mouse Lemur (Microcebus murinus)3
6
222.0111.02.0
Armadillo (Dasypus novemcinctus)10
45
2154.5111.04.5
Megabat (Pteropus vampyrus)20
80
2164.0111.04.0
Giant panda (Ailuropoda melanoleuca reference isolate)4
8
222.0111.02.0
Greater bamboo lemur (Prolemur simus)2
4
222.0111.02.0
Olive baboon (Papio anubis)2
5
232.5111.02.5
Pig-tailed macaque (Macaca nemestrina)1
2
222.0111.02.0
Ryukyu mouse (Mus caroli strain CAROLI_EIJ)1
2
222.0111.02.0
Dingo (Canis lupus dingo)4
12
253.0111.03.0
Sheep (Ovis aries reference breed)11
22
222.0111.02.0
White-tufted-ear marmoset (Callithrix jacchus)14
380
234627.1111.027.1
Mouse (Mus musculus reference (CL57BL6) strain)107
302
2472.8111.02.8
Prairie vole (Microtus ochrogaster)3
6
222.0111.02.0
Human (Homo sapiens)61
146
282.4111.02.4
Lesser Egyptian jerboa (Jaculus jaculus)1
2
222.0111.02.0
Blue whale (Balaenoptera musculus)1
3
333.0111.03.0
Black snub-nosed monkey (Rhinopithecus bieti)3
6
222.0111.02.0
Cattle (Bos taurus reference breed)8
21
262.6111.02.6
Shrew (Sorex araneus)6
17
262.8111.02.8
Domestic yak (Bos grunniens)2
4
222.0111.02.0
Hedgehog (Erinaceus europaeus)10
24
262.4111.02.4
Pika (Ochotona princeps)65
150
272.3111.02.3
Steppe mouse (Mus spicilegus)1
2
222.0111.02.0
Lesser hedgehog tenrec (Echinops telfairi)4
8
222.0111.02.0
Degu (Octodon degus)1
2
222.0111.02.0
Donkey (Equus asinus reference breed)2
4
222.0111.02.0
Western wild mouse (Mus spretus reference strain)41
128
2283.1111.03.1
Crab-eating macaque (Macaca fascicularis)1
2
222.0111.02.0
Ma's night monkey (Aotus nancymaae)4
8
222.0111.02.0
Golden Hamster (Mesocricetus auratus)6
12
222.0111.02.0
Chimpanzee (Pan troglodytes)39
93
262.4111.02.4
Yarkand deer (Cervus hanglu yarkandensis)4
9
232.2111.02.2
Upper Galilee mountains blind mole rat (Nannospalax galili)2
4
222.0111.02.0
Long-tailed chinchilla (Chinchilla lanigera)5
10
222.0111.02.0
Hybrid - Bos Indicus (Bos indicus x Bos taurus)2
4
222.0111.02.0
Sloth (Choloepus hoffmanni)9
21
252.3111.02.3
Gibbon (Nomascus leucogenys)10
20
222.0111.02.0
Coquerel's sifaka (Propithecus coquereli)4
8
222.0111.02.0
Bolivian squirrel monkey (Saimiri boliviensis boliviensis)2
4
222.0111.02.0
Gorilla (Gorilla gorilla gorilla)18
40
262.2111.02.2
Vervet-AGM (Chlorocebus sabaeus)19
48
262.5111.02.5
Tree Shrew (Tupaia belangeri)12
41
2103.4111.03.4
Norway rat - BN/NHsdMcwi (Rattus norvegicus reference strain)1
2
222.0111.02.0
Drill (Mandrillus leucophaeus)7
14
222.0111.02.0
Hyrax (Procavia capensis)16
51
273.2111.03.2
Pig (Sus scrofa reference breed)5
12
232.4111.02.4
Arabian camel (Camelus dromedarius)1
2
222.0111.02.0
Golden snub-nosed monkey (Rhinopithecus roxellana)2
4
222.0111.02.0
Shrew mouse (Mus pahari strain PAHARI_EIJ)1
2
222.0111.02.0
Eurasian red squirrel (Sciurus vulgaris)1
2
222.0111.02.0
Red fox (Vulpes vulpes)1
2
222.0111.02.0
Sumatran orangutan (Pongo abelii)4
8
222.0111.02.0
Kangaroo rat (Dipodomys ordii)1
2
222.0111.02.0
Bushbaby (Otolemur garnettii)10
20
222.0111.02.0
Microbat (Myotis lucifugus)8
20
252.5111.02.5
Sperm whale (Physeter macrocephalus)3
7
232.3111.02.3
Marsupials (Marsupialia)56
1259
235522.5243.15.8
Opossum (Monodelphis domestica)18
55
283.1111.03.1
Tasmanian devil (Sarcophilus harrisii)1
2
222.0111.02.0
Diprotodontia5
10
222.0222.01.0
Wallaby (Notamacropus eugenii)2
68
224634.0111.034.0
Common wombat (Vombatus ursinus)38
97
282.6111.02.6
Platypus (Ornithorhynchus anatinus)26
5880
2392226.2111.0226.2
Reptiles and birds (Sauria)314
1962
23686.22273.41.5
Chinese softshell turtle (Pelodiscus sinensis)10
26
262.6111.02.6
Collared flycatcher (Ficedula albicollis)2
4
222.0111.02.0
Indian cobra (Naja naja)2
4
222.0111.02.0
Medium ground-finch (Geospiza fortis)1
2
222.0111.02.0
Chicken (Gallus gallus reference breed)10
64
2166.4111.06.4
Common wall lizard (Podarcis muralis)1
2
222.0111.02.0
Three-toed box turtle (Terrapene triunguis)4
8
222.0111.02.0
Eastern brown snake (Pseudonaja textilis)2
4
222.0111.02.0
Coelacanth (Latimeria chalumnae)2
235
2233117.5111.0117.5
Elephant shark (Callorhinchus milii)1
2
222.0111.02.0
Arthropods and nematodes (Ecdysozoa)2
4
222.0222.01.0
Caenorhabditis elegans (Nematode, N2) (Caenorhabditis elegans strain N2)113
647
2295.7111.05.7
Drosophila melanogaster - (Fruit fly) (Drosophila melanogaster)78
425
2485.4111.05.4
Saccharomyces cerevisiae (Saccharomyces cerevisiae S288C)44
280
2216.4111.06.4