Phylogenetic summary of ncRNA families

This page provides a summary of the Ensembl phylogenetic analysis of ncRNA families. The following views are available:

Size of gene trees (per root node)

Species# Trees% Trees# Genes% GenesMin # genesMax # genesAverage # genesMin # speciesMax # speciesAverage # speciesAverage # genes per species
Animals and Fungi (Opisthokonta)15
141107
2924279407.1211227.62.6
Bilateral animals (Bilateria)25
8374
21567335.02176121.81.5
Chordates (Chordata)87
182209
5874472094.4519299.72.8
Vertebrates (Vertebrata)201
69326
25023344.9219185.34.5
Lamprey (Petromyzon marinus)15
755
239050.3111.050.3
Jawed vertebrates (Gnathostomata)166
81328
2922448489.911193103.92.6
Bony vertebrates (Euteleostomi)411
112952
26341274.8218075.65.6
Bony fishes (Actinopterygii)5
583
2388116.626120.410.9
Ray-finned fishes (Neopterygii)9
2428
35395269.836432.922.0
Spotted gar (Lepisosteus oculatus)6
1353
2390225.5111.0225.5
Osteoglossocephalai10
2688
11379268.835126.524.7
Teleost fishes (Clupeocephala)507
22469
239844.32546.710.2
Common carp (Cyprinus carpio carpio)2
52
25026.0111.026.0
Northern pike (Esox lucius reference strain)1
395
395395395.0111.0395.0
Brown trout (Salmo trutta)4
14
273.5111.03.5
Atlantic cod (Gadus morhua)19
750
239739.5111.039.5
Bicolor damselfish (Stegastes partitus)2
4
222.0111.02.0
Lumpfish (Cyclopterus lumpus)4
446
2379111.5111.0111.5
Atlantic herring (Clupea harengus reference strain)2
4
222.0111.02.0
Indian medaka (Oryzias melastigma)3
7
232.3111.02.3
Orange clownfish (Amphiprion percula)1
2
222.0111.02.0
Coho salmon (Oncorhynchus kisutch)7
514
221473.4111.073.4
Zig-zag eel (Mastacembelus armatus)1
2
222.0111.02.0
Siamese fighting fish (Betta splendens)1
2
222.0111.02.0
Huchen (Hucho hucho)1
2
222.0111.02.0
Tongue sole (Cynoglossus semilaevis)1
2
222.0111.02.0
Chinook salmon (Oncorhynchus tshawytscha reference strain)1
396
396396396.0111.0396.0
Japanese medaka HdrR (Oryzias latipes)10
70
2187.0111.07.0
Tetraodon (Tetraodon nigroviridis)13
57
2174.4111.04.4
Zebra mbuna (Maylandia zebra)1
5
555.0111.05.0
Goldfish (Carassius auratus)4
1379
246388344.8111.0344.8
Zebrafish (Danio rerio)39
1337
238034.3111.034.3
Yellowtail amberjack (Seriola lalandi dorsalis)10
20
222.0111.02.0
Tiger tail seahorse (Hippocampus comes)3
6
222.0111.02.0
Atlantic salmon (Salmo salar)632
3989
23806.3111.06.3
Pinecone soldierfish (Myripristis murdjan)1
2
222.0111.02.0
Nile tilapia (Oreochromis niloticus)28
137
2234.9111.04.9
Clown anemonefish (Amphiprion ocellaris ecotype Okinawa)2
5
232.5111.02.5
Fugu (Takifugu rubripes)2
6
333.0111.03.0
Channel catfish (Ictalurus punctatus strain USDA103-YYmale1)10
1139
2386113.9111.0113.9
Ballan wrasse (Labrus bergylta)1
2
222.0111.02.0
Turquoise killifish (Nothobranchius furzeri)1
2
222.0111.02.0
Amazon molly (Poecilia formosa)12
25
232.1111.02.1
Denticle herring (Denticeps clupeoides reference strain)28
7695
26398274.8111.0274.8
Pike-perch (Sander lucioperca)4
21
2125.2111.05.2
Channel bull blenny (Cottoperca gobio)2
387
2385193.5111.0193.5
Rainbow trout (Oncorhynchus mykiss)32
7808
2396244.0111.0244.0
Turbot (Scophthalmus maximus)41
10848
51390264.6111.0264.6
Asian bonytongue (Scleropages formosus)1
2
222.0111.02.0
Reedfish (Erpetoichthys calabaricus)2
4
222.0111.02.0
Lobe-finned fish (Sarcopterygii)60
17250
21452287.5211864.47.1
Coelacanth (Latimeria chalumnae)2
235
2233117.5111.0117.5
Tetrapods (Tetrapoda)41
10227
2398249.4212281.56.2
Amniotes (Amniota)288
69488
23200241.3211564.03.5
Mammals (Mammalia)21
5121
3435243.938960.94.2
Marsupials and Placental mammals (Theria)83
10461
2398126.029243.92.9
Placentals (Eutheria)11699
148860
2339712.72884.61.4
Tree Shrew (Tupaia belangeri)12
41
2103.4111.03.4
Human (Homo sapiens)61
146
282.4111.02.4
White-tufted-ear marmoset (Callithrix jacchus)14
380
234627.1111.027.1
Donkey (Equus asinus reference breed)2
4
222.0111.02.0
Pika (Ochotona princeps)65
150
272.3111.02.3
Golden Hamster (Mesocricetus auratus)6
12
222.0111.02.0
Chimpanzee (Pan troglodytes)39
93
262.4111.02.4
Hedgehog (Erinaceus europaeus)10
24
262.4111.02.4
Lesser Egyptian jerboa (Jaculus jaculus)1
2
222.0111.02.0
Sperm whale (Physeter macrocephalus)3
7
232.3111.02.3
Golden snub-nosed monkey (Rhinopithecus roxellana)2
4
222.0111.02.0
Steppe mouse (Mus spicilegus)1
2
222.0111.02.0
Domestic cat (Felis catus reference breed)1
3
333.0111.03.0
Megabat (Pteropus vampyrus)20
80
2164.0111.04.0
Sheep (Ovis aries reference breed)11
22
222.0111.02.0
Dingo (Canis lupus dingo)4
12
253.0111.03.0
Giant panda (Ailuropoda melanoleuca reference isolate)4
8
222.0111.02.0
Elephant (Loxodonta africana)6
20
263.3111.03.3
Alpaca (Vicugna pacos)7
41
2275.9111.05.9
Squirrel (Ictidomys tridecemlineatus)1
2
222.0111.02.0
Gibbon (Nomascus leucogenys)10
20
222.0111.02.0
Panamanian white-faced capuchin (Cebus imitator)1
2
222.0111.02.0
Dolphin (Tursiops truncatus)10
35
2103.5111.03.5
Gorilla (Gorilla gorilla gorilla)18
40
262.2111.02.2
Cattle (Bos taurus reference breed)8
21
262.6111.02.6
Prairie vole (Microtus ochrogaster)3
6
222.0111.02.0
Shrew mouse (Mus pahari strain PAHARI_EIJ)1
2
222.0111.02.0
Upper Galilee mountains blind mole rat (Nannospalax galili)2
4
222.0111.02.0
Vervet-AGM (Chlorocebus sabaeus)19
48
262.5111.02.5
Red fox (Vulpes vulpes)1
2
222.0111.02.0
Ferret (Mustela putorius furo)4
8
222.0111.02.0
Pig-tailed macaque (Macaca nemestrina)1
2
222.0111.02.0
Hybrid - Bos Indicus (Bos indicus x Bos taurus)2
4
222.0111.02.0
Shrew (Sorex araneus)6
17
262.8111.02.8
Coquerel's sifaka (Propithecus coquereli)4
8
222.0111.02.0
Lesser hedgehog tenrec (Echinops telfairi)4
8
222.0111.02.0
Sloth (Choloepus hoffmanni)9
21
252.3111.02.3
Norway rat - BN/NHsdMcwi (Rattus norvegicus reference strain)1
2
222.0111.02.0
Ryukyu mouse (Mus caroli strain CAROLI_EIJ)1
2
222.0111.02.0
Macaque (Macaca mulatta)1
2
222.0111.02.0
Greater bamboo lemur (Prolemur simus)2
4
222.0111.02.0
Siberian musk deer (Moschus moschiferus)3
6
222.0111.02.0
Kangaroo rat (Dipodomys ordii)1
2
222.0111.02.0
Dog (Canis lupus familiaris reference breed)21
64
2103.0111.03.0
Microbat (Myotis lucifugus)8
20
252.5111.02.5
Pig (Sus scrofa reference breed)5
12
232.4111.02.4
Eurasian red squirrel (Sciurus vulgaris)1
2
222.0111.02.0
Mouse (Mus musculus reference (CL57BL6) strain)107
302
2472.8111.02.8
Ma's night monkey (Aotus nancymaae)4
8
222.0111.02.0
Yarkand deer (Cervus hanglu yarkandensis)4
9
232.2111.02.2
Sumatran orangutan (Pongo abelii)4
8
222.0111.02.0
Western wild mouse (Mus spretus reference strain)41
128
2283.1111.03.1
Arabian camel (Camelus dromedarius)1
2
222.0111.02.0
Drill (Mandrillus leucophaeus)7
14
222.0111.02.0
Sooty mangabey (Cercocebus atys)4
9
232.2111.02.2
Horse (Equus caballus breed thoroughbred)9
22
242.4111.02.4
Armadillo (Dasypus novemcinctus)10
45
2154.5111.04.5
Crab-eating macaque (Macaca fascicularis)1
2
222.0111.02.0
Degu (Octodon degus)1
2
222.0111.02.0
Bolivian squirrel monkey (Saimiri boliviensis boliviensis)2
4
222.0111.02.0
Hyrax (Procavia capensis)16
51
273.2111.03.2
Black snub-nosed monkey (Rhinopithecus bieti)3
6
222.0111.02.0
Blue whale (Balaenoptera musculus)1
3
333.0111.03.0
Tarsier (Carlito syrichta)6
13
232.2111.02.2
Bushbaby (Otolemur garnettii)10
20
222.0111.02.0
Olive baboon (Papio anubis)2
5
232.5111.02.5
Long-tailed chinchilla (Chinchilla lanigera)5
10
222.0111.02.0
Domestic yak (Bos grunniens)2
4
222.0111.02.0
Mouse Lemur (Microcebus murinus)3
6
222.0111.02.0
Marsupials (Marsupialia)56
1259
235522.5243.15.8
Opossum (Monodelphis domestica)18
55
283.1111.03.1
Tasmanian devil (Sarcophilus harrisii)1
2
222.0111.02.0
Diprotodontia5
10
222.0222.01.0
Common wombat (Vombatus ursinus)38
97
282.6111.02.6
Wallaby (Notamacropus eugenii)2
68
224634.0111.034.0
Platypus (Ornithorhynchus anatinus)26
5880
2392226.2111.0226.2
Reptiles and birds (Sauria)314
1962
23686.22273.41.5
Chinese softshell turtle (Pelodiscus sinensis)10
26
262.6111.02.6
Chicken (Gallus gallus reference breed)10
64
2166.4111.06.4
Three-toed box turtle (Terrapene triunguis)4
8
222.0111.02.0
Medium ground-finch (Geospiza fortis)1
2
222.0111.02.0
Eastern brown snake (Pseudonaja textilis)2
4
222.0111.02.0
Common wall lizard (Podarcis muralis)1
2
222.0111.02.0
Collared flycatcher (Ficedula albicollis)2
4
222.0111.02.0
Indian cobra (Naja naja)2
4
222.0111.02.0
Leishan spiny toad (Leptobrachium leishanense)2
4
222.0111.02.0
Tropical clawed frog (Xenopus tropicalis)6
98
25016.3111.016.3
Elephant shark (Callorhinchus milii)1
2
222.0111.02.0
Ciona sea squirts (Ciona)3
6
222.0222.01.0
C.intestinalis (Ciona intestinalis)12
34
252.8111.02.8
C.savignyi (Ciona savignyi)4
25
2186.2111.06.2
Arthropods and nematodes (Ecdysozoa)2
4
222.0222.01.0
Drosophila melanogaster - (Fruit fly) (Drosophila melanogaster)78
425
2485.4111.05.4
Caenorhabditis elegans (Nematode, N2) (Caenorhabditis elegans strain N2)113
647
2295.7111.05.7
Saccharomyces cerevisiae (Saccharomyces cerevisiae S288C)44
280
2216.4111.06.4