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Statistics on ncRNA trees

Since release 58, Compara computes phylogenetic trees for the non-coding RNAs annotating by RFAM. The manuscript is in preparation. More information can be obtained here

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Size of the trees (per root node)

Species# Trees% Trees# Genes% GenesMin # genesMax # genesAverage # genesMin # speciesMax # speciesAverage # speciesAverage # genes per species
Chordates (Chordata)70
11785
16392168.4136444.94.5
Ciona sea squirts (Ciona)4
9
232.2222.01.1
Vertebrates (Vertebrata)80
14721
6396184.056239.27.5
Bony vertebrates (Euteleostomi)237
30164
2392127.326135.45.1
Ray-finned fishes (Neopterygii)2
587
291296293.5222.0146.8
Spotted gar (Lepisosteus oculatus)6
1624
236300270.7111.0270.7
Zebrafish (Danio rerio)2
463
138325231.5111.0231.5
Stickleback (Gasterosteus aculeatus)1
276
276276276.0111.0276.0
Cave fish (Astyanax mexicanus)1
2
222.0111.02.0
Lobe-finned fish (Sarcopterygii)49
10183
5394207.834824.311.4
Tetrapods (Tetrapoda)20
1974
231798.724929.83.9
Amniotes (Amniota)85
7392
239487.024822.05.5
Mammals (Mammalia)23
2595
2280112.824124.55.4
Platypus (Ornithorhynchus anatinus)9
1758
3342195.3111.0195.3
Marsupials and Placental mammals (Theria)35
5267
2391150.523915.811.0
Placental mammals (Eutheria)440
26083
239259.323810.56.7
Cow (Bos taurus)1
2
222.0111.02.0
Rat (Rattus norvegicus)2
4
222.0111.02.0
Cat (Felis catus)2
522
204318261.0111.0261.0
Human (Homo sapiens)1
6
666.0111.06.0
Opossum (Monodelphis domestica)1
2
222.0111.02.0
Reptiles and birds (Sauria)2
260
12248130.0264.063.0
Anole Lizard (Anolis carolinensis)5
1057
6325211.4111.0211.4
Duck (Anas platyrhynchos)1
2
222.0111.02.0
Coelacanth (Latimeria chalumnae)4
1258
276364314.5111.0314.5
Lamprey (Petromyzon marinus)4
1069
146373267.2111.0267.2