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Statistics on ncRNA trees

Since release 58, Compara computes phylogenetic trees for the non-coding RNAs annotating by RFAM. The manuscript is in preparation. More information can be obtained here

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Statistics about the gene-tree nodes

Species# Nodes# speciation nodes# duplication nodes# dubious nodesNode typesAverage duplication confidence scoreAverage duplication confidence score (non-dubious nodes)
Chordates (Chordata)176897413
25.0 %29.0 %
Ciona sea squirts (Ciona)16175860
62.0 %62.0 %
Vertebrates (Vertebrata)84922053396
25.0 %29.0 %
Bony vertebrates (Euteleostomi)2138643996499
17.0 %25.0 %
Lobe-finned fish (Sarcopterygii)1221405579237
23.0 %32.0 %
Tetrapods (Tetrapoda)615269209137
19.0 %32.0 %
Amniotes (Amniota)26938601367466
25.0 %34.0 %
Reptiles and birds (Sauria)982939430
64.0 %64.0 %
Mammals (Mammalia)1936625980331
25.0 %33.0 %
Marsupials and Placental mammals (Theria)434516541848843
22.0 %32.0 %
Placental mammals (Eutheria)562784639698820
52.0 %52.0 %
Marsupials (Marsupialia)127711461310
58.0 %58.0 %
Ray-finned fishes (Neopterygii)5410
11.0 %11.0 %
Ray-finned fish (excluding gars) (Clupeocephala)155313721810
50.0 %50.0 %