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Statistics on ncRNA trees

Since release 58, Compara computes phylogenetic trees for the non-coding RNAs annotating by RFAM. The manuscript is in preparation. More information can be obtained here

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Statistics about the gene-tree nodes

Species# Nodes# speciation nodes# duplication nodes# dubious nodesNode typesAverage duplication confidence scoreAverage duplication confidence score (non-dubious nodes)
Chordates (Chordata)189887922
26.0 %33.2 %
Ciona sea squirts (Ciona)15175760
67.8 %67.8 %
Vertebrates (Vertebrata)941225578138
22.1 %27.4 %
Bony vertebrates (Euteleostomi)32479281572747
17.4 %25.7 %
Ray-finned fishes (Neopterygii)38522911343
27.8 %38.3 %
Teleost fishes (Clupeocephala)342830873410
43.7 %43.7 %
Lobe-finned fish (Sarcopterygii)1078363467248
20.9 %32.0 %
Tetrapods (Tetrapoda)602256205141
17.4 %29.4 %
Amniotes (Amniota)303210141436582
23.5 %33.0 %
Mammals (Mammalia)1528607631290
21.3 %31.0 %
Marsupials and Placental mammals (Theria)403515851727723
24.9 %35.4 %
Marsupials (Marsupialia)127811331450
53.0 %53.0 %
Placental mammals (Eutheria)6712556660104650
49.6 %49.6 %
Reptiles and birds (Sauria)215120361150
60.9 %60.9 %