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Statistics on ncRNA trees

Since release 58, Compara computes phylogenetic trees for the non-coding RNAs annotating by RFAM. The manuscript is in preparation. More information can be obtained here

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Statistics about the gene-tree nodes

Species# Nodes# speciation nodes# duplication nodes# dubious nodesNode typesAverage duplication confidence scoreAverage duplication confidence score (non-dubious nodes)
Chordates (Chordata)12481367
29.0 %34.6 %
Ciona sea squirts (Ciona)15380730
65.1 %65.1 %
Vertebrates (Vertebrata)70920443669
23.8 %27.6 %
Bony vertebrates (Euteleostomi)24308281124478
18.9 %26.9 %
Ray-finned fishes (Neopterygii)3732748712
35.6 %40.5 %
Teleost fishes (Clupeocephala)368933353540
53.8 %53.8 %
Lobe-finned fish (Sarcopterygii)925412381132
26.3 %35.4 %
Tetrapods (Tetrapoda)54530316478
19.6 %28.9 %
Amniotes (Amniota)27239871277459
20.9 %28.4 %
Mammals (Mammalia)1424624513287
20.9 %32.6 %
Marsupials and Placental mammals (Theria)258611011030455
22.4 %32.3 %
Marsupials (Marsupialia)157513512240
64.2 %64.2 %
Placental mammals (Eutheria)7321060814123960
56.4 %56.4 %
Reptiles and birds (Sauria)236322421210
65.9 %65.9 %