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Statistics on ncRNA trees

Since release 58, Compara computes phylogenetic trees for the non-coding RNAs annotating by RFAM. The manuscript is in preparation. More information can be obtained here

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Statistics about the gene-tree nodes

Species# Nodes# speciation nodes# duplication nodes# dubious nodesNode typesAverage duplication confidence scoreAverage duplication confidence score (non-dubious nodes)
Chordates (Chordata)179897515
20.1 %24.1 %
Vertebrates (Vertebrata)894209563122
23.3 %28.4 %
Bony vertebrates (Euteleostomi)33059431467895
16.3 %26.2 %
Lobe-finned fish (Sarcopterygii)1064356459249
22.0 %34.0 %
Tetrapods (Tetrapoda)667262223182
16.1 %29.2 %
Amniotes (Amniota)31779861480711
20.2 %29.9 %
Mammals (Mammalia)1654580669405
19.7 %31.6 %
Marsupials and Placental mammals (Theria)4505161318221070
21.7 %34.4 %
Placental mammals (Eutheria)6816656965112010
48.1 %48.1 %
Marsupials (Marsupialia)126211131490
48.5 %48.5 %
Reptiles and birds (Sauria)211819771410
53.1 %53.1 %
Ray-finned fishes (Neopterygii)42923011584
19.1 %33.0 %
Teleost fishes (Clupeocephala)335229983540
42.1 %42.1 %
Ciona sea squirts (Ciona)15359940
56.9 %56.9 %