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Statistics on ncRNA trees

Since release 58, Compara computes phylogenetic trees for the non-coding RNAs annotating by RFAM. The manuscript is in preparation. More information can be obtained here

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Statistics about the gene-tree nodes

Species# Nodes# speciation nodes# duplication nodes# dubious nodesNode typesAverage duplication confidence scoreAverage duplication confidence score (non-dubious nodes)
Chordates (Chordata)11179302
37.8 %40.4 %
Ciona sea squirts (Ciona)10875330
78.8 %78.8 %
Vertebrates (Vertebrata)71921043772
25.2 %29.4 %
Bony vertebrates (Euteleostomi)22907451148397
17.9 %24.1 %
Lobe-finned fish (Sarcopterygii)868426316126
23.9 %33.5 %
Tetrapods (Tetrapoda)60031719885
23.4 %33.5 %
Amniotes (Amniota)27259761266483
21.9 %30.3 %
Reptiles and birds (Sauria)237722511260
60.9 %60.9 %
Mammals (Mammalia)1390629488273
18.3 %28.5 %
Marsupials and Placental mammals (Theria)23549651004385
23.8 %32.9 %
Marsupials (Marsupialia)168814102780
66.8 %66.8 %
Placental mammals (Eutheria)7345361001124520
56.8 %56.8 %
Ray-finned fishes (Neopterygii)3842888115
33.2 %39.4 %
Teleost fishes (Clupeocephala)373533294060
50.4 %50.4 %