EnsemblEnsembl Home

Statistics on ncRNA trees

Since release 58, Compara computes phylogenetic trees for the non-coding RNAs annotating by RFAM. The manuscript is in preparation. More information can be obtained here

List of available views:

Statistics about the gene-tree nodes

Species# Nodes# speciation nodes# duplication nodes# dubious nodesNode typesAverage duplication confidence scoreAverage duplication confidence score (non-dubious nodes)
Chordates (Chordata)19488988
29.3 %31.7 %
Ciona sea squirts (Ciona)12779480
74.0 %74.0 %
Vertebrates (Vertebrata)79622350271
24.1 %27.5 %
Bony vertebrates (Euteleostomi)21777531014410
19.3 %27.2 %
Lobe-finned fish (Sarcopterygii)985422420143
24.3 %32.6 %
Tetrapods (Tetrapoda)578325143110
15.9 %28.1 %
Amniotes (Amniota)27549671322465
20.8 %28.1 %
Mammals (Mammalia)1506602568336
19.9 %31.6 %
Marsupials and Placental mammals (Theria)258910841076429
23.4 %32.8 %
Placental mammals (Eutheria)7022359231109920
54.5 %54.5 %
Marsupials (Marsupialia)159213532390
66.0 %66.0 %
Reptiles and birds (Sauria)234722211260
64.2 %64.2 %
Ray-finned fishes (Neopterygii)3862779514
36.4 %41.7 %
Teleost fishes (Clupeocephala)372333283950
52.7 %52.7 %