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Statistics on ncRNA trees

Since release 58, Compara computes phylogenetic trees for the non-coding RNAs annotating by RFAM. The manuscript is in preparation. More information can be obtained here

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Statistics about the gene-tree nodes

Species# Nodes# speciation nodes# duplication nodes# dubious nodesNode typesAverage duplication confidence scoreAverage duplication confidence score (non-dubious nodes)
Chordates (Chordata)11584283
29.9 %33.1 %
Vertebrates (Vertebrata)68821439480
23.9 %28.7 %
Bony vertebrates (Euteleostomi)26658551306504
19.9 %27.5 %
Lobe-finned fish (Sarcopterygii)922406396120
23.7 %30.9 %
Tetrapods (Tetrapoda)657331205121
19.8 %31.5 %
Amniotes (Amniota)262110021143476
22.9 %32.5 %
Reptiles and birds (Sauria)233322041290
61.5 %61.5 %
Mammals (Mammalia)1515648574293
19.7 %29.8 %
Marsupials and Placental mammals (Theria)276511441143478
21.9 %31.1 %
Marsupials (Marsupialia)153913262130
67.4 %67.4 %
Placental mammals (Eutheria)7306860856122120
56.2 %56.2 %
Ray-finned fishes (Neopterygii)41528911214
41.8 %47.1 %
Teleost fishes (Clupeocephala)367832973810
48.7 %48.7 %
Ciona sea squirts (Ciona)14581640
70.3 %70.3 %