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Statistics on ncRNA trees

Since release 58, Compara computes phylogenetic trees for the non-coding RNAs annotating by RFAM. The manuscript is in preparation. More information can be obtained here

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Statistics about the gene-tree nodes

Species# Nodes# speciation nodes# duplication nodes# dubious nodesNode typesAverage duplication confidence scoreAverage duplication confidence score (non-dubious nodes)
Chordates (Chordata)148854914
17.8 %22.9 %
Vertebrates (Vertebrata)809204501104
25.8 %31.1 %
Bony vertebrates (Euteleostomi)2060650923487
17.2 %26.3 %
Ray-finned fishes (Neopterygii)6501
0.0 %0.0 %
Teleost fishes (Clupeocephala)196417562080
46.8 %46.8 %
Lobe-finned fish (Sarcopterygii)1231373555303
20.8 %32.1 %
Tetrapods (Tetrapoda)576239192145
17.4 %30.5 %
Amniotes (Amniota)27728291374569
21.9 %30.9 %
Mammals (Mammalia)1744597780367
20.5 %30.1 %
Marsupials and Placental mammals (Theria)456416671951946
22.7 %33.7 %
Marsupials (Marsupialia)125611221340
55.2 %55.2 %
Placental mammals (Eutheria)6117750526106510
49.4 %49.4 %
Reptiles and birds (Sauria)965914510
65.2 %65.2 %
Ciona sea squirts (Ciona)13975640
67.2 %67.2 %