21 murinae EPO
This alignment has been generated in Ensembl release 114 and is composed of 15,101 blocks (up to 990,194 bp long).
API access
| Species | Assembly | Genome length (bp) | Genome coverage (bp) | Genome coverage (%) | Coding exon length (bp) | Coding exon coverage (bp) | Coding exon coverage (%) |
|---|---|---|---|---|---|---|---|
| Norway rat - BN/NHsdMcwi (Rattus norvegicus) | GRCr8 | 2,849,597,492 | 2,357,185,024 | 82.72 | 37,775,112 | 34,289,768 | 90.77 |
| Ryukyu mouse (Mus caroli) | CAROLI_EIJ_v1.1 | 2,553,112,587 | 2,245,929,234 | 87.97 | 32,770,133 | 31,649,149 | 96.58 |
| Western wild mouse (Mus spretus) | SPRET_EiJ_v3 | 2,546,544,085 | 2,416,467,840 | 94.89 | 35,765,005 | 34,162,371 | 95.52 |
| Mouse PWK/PhJ (Mus musculus musculus) | PWK_PhJ_v3 | 2,507,124,359 | 2,408,578,752 | 96.07 | 35,698,250 | 34,354,390 | 96.24 |
| Mouse LP/J (Mus musculus) | LP_J_v3 | 2,856,326,410 | 2,468,232,057 | 86.41 | 36,494,133 | 34,904,210 | 95.64 |
| Mouse 129S1/SvImJ (Mus musculus) | 129S1_SvImJ_v3 | 2,516,264,170 | 2,427,802,940 | 96.48 | 35,655,630 | 34,521,080 | 96.82 |
| Mouse WSB/EiJ (Mus musculus domesticus) | WSB_EiJ_v3 | 2,519,257,335 | 2,401,823,382 | 95.34 | 35,504,683 | 34,190,152 | 96.30 |
| Mouse (Mus musculus) | GRCm39 | 2,728,222,451 | 2,462,420,205 | 90.26 | 36,936,991 | 35,006,727 | 94.77 |
| Mouse C57BL/6NJ (Mus musculus) | C57BL_6NJ_v3 | 2,514,609,827 | 2,429,618,051 | 96.62 | 35,790,223 | 34,657,691 | 96.84 |
| Mouse NZO/HlLtJ (Mus musculus) | NZO_HlLtJ_v3 | 2,822,921,545 | 2,463,097,282 | 87.25 | 36,491,980 | 34,756,345 | 95.24 |
| Mouse BALB/cJ (Mus musculus) | BALB_cJ_v3 | 2,519,913,071 | 2,430,867,203 | 96.47 | 35,834,463 | 34,636,922 | 96.66 |
| Mouse NOD/ShiLtJ (Mus musculus) | NOD_ShiLtJ_v3 | 2,517,363,842 | 2,420,255,512 | 96.14 | 35,731,295 | 34,536,008 | 96.65 |
| Mouse A/J (Mus musculus) | A_J_v3 | 2,528,261,065 | 2,435,021,051 | 96.31 | 35,814,237 | 34,652,259 | 96.76 |
| Mouse CBA/J (Mus musculus) | CBA_J_v3 | 2,520,503,294 | 2,428,392,973 | 96.35 | 35,753,260 | 34,565,940 | 96.68 |
| Mouse C3H/HeJ (Mus musculus) | C3H_HeJ_v3 | 2,532,437,443 | 2,429,455,578 | 95.93 | 35,740,515 | 34,594,250 | 96.79 |
| Mouse DBA/2J (Mus musculus) | DBA_2J_v3 | 2,603,173,076 | 2,456,344,735 | 94.36 | 36,533,929 | 34,950,845 | 95.67 |
| Mouse AKR/J (Mus musculus) | AKR_J_v3 | 2,502,437,358 | 2,415,798,255 | 96.54 | 35,688,511 | 34,534,142 | 96.77 |
| Mouse FVB/NJ (Mus musculus) | FVB_NJ_v3 | 2,516,166,698 | 2,396,599,022 | 95.25 | 35,543,534 | 34,321,648 | 96.56 |
| Mouse CAST/EiJ (Mus musculus castaneus) | CAST_EiJ_v3 | 2,519,863,764 | 2,395,240,073 | 95.05 | 35,773,011 | 34,283,765 | 95.84 |
| Steppe mouse (Mus spicilegus) | MUSP714 | 2,496,083,520 | 2,197,487,800 | 88.04 | 35,178,654 | 32,391,154 | 92.08 |
| Shrew mouse (Mus pahari) | PAHARI_EIJ_v1.1 | 2,475,012,951 | 2,186,023,840 | 88.32 | 32,578,444 | 31,339,415 | 96.20 |
Block size distribution
| Size range | All 15,101 alignment blocks | |
|---|---|---|
| # blocks | Total size (incl. gaps) | |
| 10 bp - 100 bp | 3 |
231.0 bp |
| 100 bp - 1 kb | 54 |
25.8 kb |
| 1 kb - 10 kb | 273 |
1.5 Mb |
| 10 kb - 100 kb | 5,395 |
272.2 Mb |
| 100 kb - 1 Mb | 6,188 |
2.1 Gb |
| 1 Mb - 10 Mb | 3,188 |
3.2 Gb |