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Chicken vs Kakapo Synteny results

The syntenic regions between Chicken (Gallus gallus, bGalGal1.mat.broiler.GRCg7b) and Kakapo (Strigops habroptila, bStrHab1_v1.p) were extracted from their pairwise alignment in Ensembl release 107. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 204 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Chicken

Uncovered: 58,663,856 out of 1,053,332,251
Covered: 994,668,395 out of 1,053,332,251

Uncovered: 2,015,354 out of 31,304,036
Covered: 29,288,682 out of 31,304,036
Kakapo

Uncovered: 71,926,571 out of 1,165,621,973
Covered: 1,093,695,402 out of 1,165,621,973

Uncovered: 1,449,066 out of 26,948,573
Covered: 25,499,507 out of 26,948,573