Description

collagen, type XI, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2186]

Synonyms

CO11A1, COLL6, STL2

Gene

This transcript is a product of gene ENSG00000060718

This gene has 10 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDLengthProteinBiotypeCCDSUniProtRefSeqFlags
COL11A1-001ENST000003700967286 bp1806 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS778B4DQZ0 P12107 Q4FAC4
NM_001854
NP_001845
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
COL11A1-201ENST000003534147173 bp1767 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS53348B4DQZ0 P12107 NM_001190709
NP_001177638
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
COL11A1-008ENST000005127565442 bp1690 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS780B4DQZ0 P12107 Q4FAC4
NM_080630
NP_542197
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
COL11A1-202ENST000003583927327 bp1818 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B4DQZ0 C9JMN2 P12107
NM_080629
NP_542196
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
COL11A1-002ENST000004272391709 bp570 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9JMN2 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
COL11A1-003ENST00000447608776 bp200 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H7C381 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
COL11A1-004ENST00000461720678 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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COL11A1-005ENST00000475980377 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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COL11A1-007ENST00000470170785 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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COL11A1-006ENST00000465209297 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Statistics

Exons: 67 Coding exons: 67 Transcript length: 7,286 bps Translation length: 1,806 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS778

Uniprot

This transcript corresponds to the following Uniprot identifiers: P12107

Ensembl version

ENST00000370096.4

Type

Known protein coding

Prediction Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays