Description

collagen, type XI, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2186]

Synonyms

CO11A1, COLL6, STL2

Gene

This transcript is a product of gene ENSG00000060718

This gene has 10 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDLengthProteinBiotypeCCDSUniProtRefSeqFlags
COL11A1-001ENST000003700967286 bp1806 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS778B4DQZ0 P12107 Q4FAC4
NM_001854
NP_001845
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
COL11A1-201ENST000003534147173 bp1767 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS53348B4DQZ0 P12107 NM_001190709
NP_001177638
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
COL11A1-008ENST000005127565442 bp1690 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS780B4DQZ0 P12107 Q4FAC4
NM_080630
NP_542197
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
COL11A1-202ENST000003583927327 bp1818 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B4DQZ0 C9JMN2 P12107
NM_080629
NP_542196
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
COL11A1-002ENST000004272391709 bp570 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9JMN2 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
COL11A1-003ENST00000447608776 bp200 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H7C381 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
COL11A1-004ENST00000461720678 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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COL11A1-005ENST00000475980377 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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COL11A1-007ENST00000470170785 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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COL11A1-006ENST00000465209297 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Statistics

Exons: 11 Coding exons: 0 Transcript length: 678 bps

Ensembl version

ENST00000461720.2

Type

Known processed transcript

Prediction Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:

Transcript-based displays