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Ensembl Variation - Detailed species data count

List of data counts by category and species - Ensembl 114

Structural variant data

There are currently 10 species with structural variant data in the Ensembl Variation databases:

Species Structural variant (e!113 → e!114) Supporting evidence (e!113 → e!114)
Cattle
Bos taurus
18 K - 529 K -
Dog
Canis lupus familiaris
104 K - 107 K -
Dog - Boxer
Canis lupus familiarisboxer
104 K - 107 K -
Horse
Equus caballus
193 K - 193 K -
Human
Homo sapiens
6.8 M - 26 M -
Mouse
Mus musculus
791 K - 1.2 M -
Pig
Sus scrofa
224 K - 310 K -
Sheep
Ovis aries rambouillet
2 - 2 -
Sheep (texel)
Ovis aries
2 - 2 -
Zebrafish
Danio rerio
5 K - 29 K -

Genotype data

There are currently 2 species with genotype data in the Ensembl Variation databases:

Species Variants with sample genotype (e!113 → e!114) Variants with population genotype (e!113 → e!114)
Platypus
Ornithorhynchus anatinus
1.1 M - 1.1 M -
Sheep (texel)
Ovis aries
64 - 147 -

There are currently 16 species with genotype data loaded dynamically from vcf file:

Species Variants with sample genotype (e!113 → e!114) Variants with population genotype (e!113 → e!114)
American mink
Neovison vison
- 34 K -
Atlantic salmon
Salmo salar
8 M - 8 M -
Cattle
Bos taurus
18 M - 18 M -
Chicken
Gallus gallus
14 M - 14 M -
Dog
Canis lupus familiaris
27 M - 27 M -
Dog - Boxer
Canis lupus familiarisboxer
29 M - 29 M -
Goat
Capra hircus
31 M - 31 M -
Great Tit
Parus major
497 K (-1,000) 497 K (-1,000)
Horse
Equus caballus
7.5 M - 7.5 M -
Human
Homo sapiens
27 M - 1.9 M -
Mouse
Mus musculus
10 M - 10 M -
Nile tilapia
Oreochromis niloticus
- 63 K -
Rabbit
Oryctolagus cuniculus
82 K - 82 K -
Sheep
Ovis aries rambouillet
40 M - 40 M -
Sheep (texel)
Ovis aries
46 M - 46 M -
Vervet-AGM
Chlorocebus sabaeus
62 M - 62 M -
---------------------------------

Phenotype data

The list of phenotype/disease/trait association sources by species is available in the page Phenotype sources.

There are currently 15 species with phenotype data in the Ensembl Variation databases:

Species Phenotype (e!113 → e!114) Phenotype association (e!113 → e!114)
Cat - Abyssinian
Felis catus abyssinian
105 - 106 -
Cattle
Bos taurus
713 (+16) 163 K (+224)
Chicken
Gallus gallus
256 (+2) 16 K (+2,000)
Dog
Canis lupus familiaris
343 (+2) 350 (+2)
Dog - Boxer
Canis lupus familiarisboxer
342 (+1) 349 (+1)
Domestic cat
Felis catus
94 (-11) 99 (-7)
Goat
Capra hircus
96 (+19) 2 K (+632)
Horse
Equus caballus
99 (-2) 2 K (-2)
Human
Homo sapiens
62 K (+488) 19 M (+591,000)
Mouse
Mus musculus
10 K - 250 K (-28)
Norway rat - BN/NHsdMcwi
Rattus norvegicus
12 K (+93) 137 K (+3,000)
Pig
Sus scrofa
463 (+16) 50 K (+6,000)
Sheep
Ovis aries rambouillet
177 (+9) 3 K (+147)
Sheep (texel)
Ovis aries
170 (+86) 3 K (+3,000)
Zebrafish
Danio rerio
26 K (+904) 83 K (-5,000)

Citation data

There are currently 13 species with citation data in the Ensembl Variation databases:

Species Cited sequence variant (e!113 → e!114) Publication (e!113 → e!114)
Cattle
Bos taurus
2 K - 226 -
Chicken
Gallus gallus
742 - 113 -
Dog
Canis lupus familiaris
308 (-2) 76 -
Dog - Boxer
Canis lupus familiarisboxer
304 - 75 -
Goat
Capra hircus
13 - 2 -
Horse
Equus caballus
35 - 8 -
Human
Homo sapiens
771 K (-89,000) 191 K (-56,000)
Mouse
Mus musculus
8 K - 790 -
Norway rat - BN/NHsdMcwi
Rattus norvegicus
90 - 19 -
Pig
Sus scrofa
352 (-3) 45 -
Sheep
Ovis aries rambouillet
65 - 17 -
Sheep (texel)
Ovis aries
77 - 17 -
Zebrafish
Danio rerio
29 (-1) 6 -

Prediction data

There are currently 15 species with prediction data in the Ensembl Variation databases:

Species Variants with SIFT data (e!113 → e!114) Variants with PolyPhen data (e!113 → e!114)
Cat - Abyssinian
Felis catus abyssinian
7 K - 0 -
Cattle
Bos taurus
2.1 M (-116,000) 0 -
Chicken
Gallus gallus
281 K (-12,000) 0 -
Dog
Canis lupus familiaris
172 K (+3,000) 0 -
Dog - Boxer
Canis lupus familiarisboxer
162 K - 0 -
Domestic cat
Felis catus
8 K (+893) 0 -
Goat
Capra hircus
102 K (-12,000) 0 -
Horse
Equus caballus
351 K (-550) 0 -
Human
Homo sapiens
9.7 M (+125,000) 9.5 M (+123,000)
Mouse
Mus musculus
640 K (+9,000) 0 -
Norway rat - BN/NHsdMcwi
Rattus norvegicus
32 K (-1,000) 0 -
Pig
Sus scrofa
269 K (+924) 0 -
Sheep
Ovis aries rambouillet
433 K (+496) 0 -
Sheep (texel)
Ovis aries
235 K - 0 -
Zebrafish
Danio rerio
89 K (-253) 0 -

The full list of species with their assembly versions in Ensembl is available here.