Ensembl Variation - Detailed species data count

List of data counts by category and species - Ensembl 111

Structural variant data

There are currently 10 species with structural variant data in the Ensembl Variation databases:

Species	Structural variant	(e!110 → e!111)	Supporting evidence	(e!110 → e!111)
Cow Bos taurus	18 K	-	529 K	-
Dog Canis lupus familiaris	104 K	-	107 K	-
Dog - Boxer Canis lupus familiarisboxer	104 K	-	107 K	-
Horse Equus caballus	193 K	-	193 K	-
Human Homo sapiens	6.8 M	(+4,000)	26 M	(+5,000)
Mouse Mus musculus	791 K	-	1.2 M	-
Pig Sus scrofa	224 K	-	310 K	-
Sheep Ovis aries rambouillet	2	-	2	-
Sheep (texel) Ovis aries	2	-	2	-
Zebrafish Danio rerio	5 K	-	29 K	-

Genotype data

There are currently 3 species with genotype data in the Ensembl Variation databases:

Species	Variants with sample genotype	(e!110 → e!111)	Variants with population genotype	(e!110 → e!111)
Platypus Ornithorhynchus anatinus	1.1 M	-	1.1 M	-
Sheep Ovis aries rambouillet	64	-	147	-
Sheep (texel) Ovis aries	64	-	147	-

There are currently 10 species with genotype data loaded dynamically from vcf file:

Species	Variants with sample genotype	(e!110 → e!111)	Variants with population genotype	(e!110 → e!111)
Atlantic salmon Salmo salar	8 M	-	8 M	-
Chicken Gallus gallus	14 M	-	14 M	-
Cow Bos taurus	18 M	-	18 M	-
Great Tit Parus major	497 K	-	497 K	-
Human Homo sapiens	27 M	-	27 M	-
Mouse Mus musculus	10 M	-	10 M	-
Rabbit Oryctolagus cuniculus	82 K	-	82 K	-
Sheep Ovis aries rambouillet	34 M	-	34 M	-
Sheep (texel) Ovis aries	38 M	-	38 M	-
Vervet-AGM Chlorocebus sabaeus	62 M	-	62 M	-

Phenotype data

The list of phenotype/disease/trait association sources by species is available in the page Phenotype sources.

There are currently 14 species with phenotype data in the Ensembl Variation databases:

Species	Phenotype	(e!110 → e!111)	Phenotype association	(e!110 → e!111)
Cat Felis catus	97	(+5)	98	(+5)
Chicken Gallus gallus	250	(+4)	13 K	(+76)
Cow Bos taurus	700	(+2)	164 K	(-136)
Dog Canis lupus familiaris	326	(+13)	336	(+13)
Dog - Boxer Canis lupus familiarisboxer	325	(+12)	333	(+11)
Goat Capra hircus	41	-	141	(-2)
Horse Equus caballus	99	(+1)	2 K	(+9)
Human Homo sapiens	48 K	(+4,000)	18 M	(+1 million)
Mouse Mus musculus	10 K	(+54)	239 K	(+5,000)
Pig Sus scrofa	455	(-4)	36 K	(+12,000)
Rat Rattus norvegicus	11 K	(+88)	142 K	(+8,000)
Sheep Ovis aries rambouillet	153	(-2)	2 K	(+55)
Sheep (texel) Ovis aries	71	(-89)	133	(-2,000)
Zebrafish Danio rerio	24 K	(+633)	84 K	(+1,000)

Citation data

There are currently 13 species with citation data in the Ensembl Variation databases:

Species	Cited sequence variant	(e!110 → e!111)	Publication	(e!110 → e!111)
Chicken Gallus gallus	742	-	113	-
Cow Bos taurus	2 K	-	226	-
Dog Canis lupus familiaris	310	-	76	-
Dog - Boxer Canis lupus familiarisboxer	310	-	76	-
Goat Capra hircus	13	-	2	-
Horse Equus caballus	35	-	8	-
Human Homo sapiens	791 K	(+73,000)	231 K	(+10,000)
Mouse Mus musculus	8 K	-	790	-
Pig Sus scrofa	355	-	45	-
Rat Rattus norvegicus	90	-	19	-
Sheep Ovis aries rambouillet	77	-	17	-
Sheep (texel) Ovis aries	77	-	17	-
Zebrafish Danio rerio	30	-	6	-

Prediction data

There are currently 14 species with prediction data in the Ensembl Variation databases:

Species	Variants with SIFT data	(e!110 → e!111)	Variants with PolyPhen data	(e!110 → e!111)
Cat Felis catus	7 K	-	0	-
Chicken Gallus gallus	294 K	-	0	-
Cow Bos taurus	2.2 M	(+83,000)	0	-
Dog Canis lupus familiaris	166 K	-	0	-
Dog - Boxer Canis lupus familiarisboxer	41 K	-	0	-
Goat Capra hircus	114 K	-	0	-
Horse Equus caballus	351 K	-	0	-
Human Homo sapiens	10 M	(+2.1 million)	9.8 M	(+2.1 million)
Mouse Mus musculus	629 K	(-13)	0	-
Pig Sus scrofa	269 K	-	0	-
Rat Rattus norvegicus	33 K	-	0	-
Sheep Ovis aries rambouillet	208 K	(+54,000)	0	-
Sheep (texel) Ovis aries	235 K	-	0	-
Zebrafish Danio rerio	90 K	-	0	-

The full list of species with their assembly versions in Ensembl is available here.