Description

apolipoprotein B [Source:MGI Symbol;Acc:MGI:88052]

Location
INSDC coordinates

chromosome:GRCm38:CM001005.2:7977648:8016835:1

About this gene

This gene has 4 transcripts (splice variants), 89 orthologues and is a member of 1 Ensembl protein family.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Apob-001ENSMUST00000037811139344505aaENSMUSP00000036044
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS49022E9Q414 NM_009693
NP_033823
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
Apob-004ENSMUST00000037520133694456aaENSMUSP00000035761
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9Q1Y3 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Apob-005ENSMUST000001712392174411aaENSMUSP00000129496
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F7A3M3 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Apob-002ENSMUST000001712711118329aaENSMUSP00000127147
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9Q4G4 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays