Description

apolipoprotein B [Source:MGI Symbol;Acc:MGI:88052]

Location
About this transcript

This transcript has 29 exons, is annotated with 8 domains and features, is associated with 172 variations and maps to 55 oligo probes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Apob-001ENSMUST00000037811139344505aaENSMUSP00000036044
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS49022E9Q414 NM_009693
NP_033823
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Apob-004ENSMUST00000037520133694456aaENSMUSP00000035761
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9Q1Y3 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Apob-005ENSMUST000001712392174411aaENSMUSP00000129496
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F7A3M3 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Apob-002ENSMUST000001712711118329aaENSMUSP00000127147
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9Q4G4 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Protein domains for ENSMUSP00000036044.6

Transcript-based displays