Description

apolipoprotein B [Source:MGI Symbol;Acc:MGI:88052]

Location
About this transcript

This transcript has 29 exons, is annotated with 18 domains and features, is associated with 172 variations and maps to 55 oligo probes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Apob-001ENSMUST00000037811139344505aaENSMUSP00000036044
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS49022E9Q414 NM_009693
NP_033823
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
Apob-004ENSMUST00000037520133694456aaENSMUSP00000035761
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9Q1Y3 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Apob-005ENSMUST000001712392174411aaENSMUSP00000129496
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F7A3M3 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Apob-002ENSMUST000001712711118329aaENSMUSP00000127147
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9Q4G4 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Protein domains for ENSMUSP00000036044.6

Transcript-based displays