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Transcript: MGP_BALBcJ_T0062223.1

Description

regulatory factor X, 5 (influences HLA class II expression) [Source:MGI Symbol;Acc:MGI:1858421]

Location

Chromosome 3: 92,455,561-92,460,979 forward strand.

Reference strain equivalent

Rfx5

About this transcript

This transcript has 11 exons, is annotated with 29 domains and features and maps to 154 oligo probes.

Gene

This transcript is a product of gene MGP_BALBcJ_G0027533.1 Show transcript tableHide transcript table

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
MGP_BALBcJ_T0062224.1-4333658aaMGP_BALBcJ_P0062224
 
Protein coding
-Ensembl Canonical
MGP_BALBcJ_T0062230.1-4450303aaMGP_BALBcJ_P0062230
 
Protein coding
--
MGP_BALBcJ_T0062233.1-4367303aaMGP_BALBcJ_P0062233
 
Protein coding
--
MGP_BALBcJ_T0062238.1-4189658aaMGP_BALBcJ_P0062238
 
Protein coding
--
MGP_BALBcJ_T0062223.1-2355658aaMGP_BALBcJ_P0062223
 
Protein coding
CCDS17598D3YTK4 D3YVW1 D3YZK7
D3Z0D4 D6RDE5 K4DI79
Q6DI69 Q9JL61 		-
MGP_BALBcJ_T0062237.1-2350658aaMGP_BALBcJ_P0062237
 
Protein coding
--
MGP_BALBcJ_T0062234.1-882181aaMGP_BALBcJ_P0062234
 
Protein coding
--
MGP_BALBcJ_T0062236.1-565105aaMGP_BALBcJ_P0062236
 
Protein coding
--
MGP_BALBcJ_T0062226.1-53890aaMGP_BALBcJ_P0062226
 
Protein coding
--
MGP_BALBcJ_T0062235.1-53695aaMGP_BALBcJ_P0062235
 
Protein coding
--
MGP_BALBcJ_T0062225.1-486131aaMGP_BALBcJ_P0062225
 
Protein coding
--
MGP_BALBcJ_T0062227.1-401441aaMGP_BALBcJ_P0062227
 
Nonsense mediated decay
--
MGP_BALBcJ_T0062229.1-70541aaMGP_BALBcJ_P0062229
 
Nonsense mediated decay
--
MGP_BALBcJ_T0062231.1-52541aaMGP_BALBcJ_P0062231
 
Nonsense mediated decay
--
MGP_BALBcJ_T0062228.1-346No protein-
 
Processed transcript
--
MGP_BALBcJ_T0062232.1-4139No protein-
 
Retained intron
--
MGP_BALBcJ_T0062239.1-680No protein-
 
Retained intron
--

Summary

Statistics

Exons: 11, Coding exons: 9, Transcript length: 2,355 bps, Translation length: 658 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9JL61

CCDS

This transcript is a member of the Mouse BALB/cJ CCDS set: CCDS17598

Version

MGP_BALBcJ_T0062223.1

Type

Protein coding

Annotation Method

Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the reference mouse (GRCm38) and strain-specific RNA-seq data.