Transcript: ENSMUST00000239527.1 Rps6ka4-201

Description

ribosomal protein S6 kinase, polypeptide 4 [Source:MGI Symbol;Acc:MGI:1930076]

Gene Synonyms

1110069D02Rik, 90kDa, MSK2

Location

Chromosome 19: 6,806,578-6,818,004 reverse strand.

About this transcript

This transcript has 17 exons, is annotated with 28 domains and features, is associated with 1110 variant alleles and maps to 267 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000118668.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000239527.1	Rps6ka4-201	3140	773aa	ENSMUSP00000159422.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS37899	Q9Z2B9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000239530.1	Rps6ka4-204	469	50aa	ENSMUSP00000159424.2	Nonsense mediated decay		A0A7N9VSZ1	-
ENSMUST00000239529.1	Rps6ka4-203	367	48aa	ENSMUSP00000159423.2	Nonsense mediated decay		A0A7N9VR96	-
ENSMUST00000239528.1	Rps6ka4-202	597	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000239532.1	Rps6ka4-206	361	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000239531.1	Rps6ka4-205	345	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 17, Coding exons: 17, Transcript length: 3,140 bps, Translation length: 773 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Z2B9

CCDS

This transcript is a member of the Mouse CCDS set: CCDS37899

Version

ENSMUST00000239527.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000239527.1 Rps6ka4-201

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Transcript: ENSMUST00000239527.1 Rps6ka4-201

Summary

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