Transcript: ENSMUST00000239532.1 Rps6ka4-206

Description

ribosomal protein S6 kinase, polypeptide 4 [Source:MGI Symbol;Acc:MGI:1930076]

Gene Synonyms

1110069D02Rik, 90kDa, MSK2

Location

Chromosome 19: 6,817,533-6,817,980 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 485 variant alleles and maps to 54 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000118668.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000239527.1	Rps6ka4-201	3140	773aa	ENSMUSP00000159422.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS37899	Q9Z2B9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000239530.1	Rps6ka4-204	469	50aa	ENSMUSP00000159424.2	Nonsense mediated decay		A0A7N9VSZ1	-
ENSMUST00000239529.1	Rps6ka4-203	367	48aa	ENSMUSP00000159423.2	Nonsense mediated decay		A0A7N9VR96	-
ENSMUST00000239528.1	Rps6ka4-202	597	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000239532.1	Rps6ka4-206	361	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000239531.1	Rps6ka4-205	345	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 361 bps,

Version

ENSMUST00000239532.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSMUST00000239532.1 Rps6ka4-206

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSMUST00000239532.1 Rps6ka4-206

Summary

About Us

Get help

Our sister sites

Follow us