Transcript: ENSDART00000042065.9 COL11A1-202

Description

collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]

Location

About this transcript

This transcript has 66 exons, is annotated with 72 domains and features, is associated with 2188 variant alleles and maps to 123 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000003503.11	COL11A1-201	6834	1813aa	ENSDARP00000002692.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QSJ2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000042065.9	COL11A1-202	5740	1736aa	ENSDARP00000042064.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A2RUX5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 66, Coding exons: 66, Transcript length: 5,740 bps, Translation length: 1,736 residues

Version

ENSDART00000042065.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.