Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Cellular component
- GO: Biological process
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: col11a1a ENSDARG00000026165

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Description

collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]

Location

Chromosome 24: 28,764,021-28,893,303 reverse strand.

GRCz11:CM002908.2

About this gene

This gene has 2 transcripts (splice variants), 232 orthologues, 52 paralogues and is associated with 19 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000003503.11	col11a1a-201	6834	1813aa	ENSDARP00000002692.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QSJ2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000042065.9	col11a1a-202	5740	1736aa	ENSDARP00000042064.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A2RUX5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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