Transcript: ENSDART00000009386.11 gpatch1-201

Description

G patch domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040914-65]

Gene Synonyms

im:7135982, wu:fc11h11, wu:fj99h08

Location

About this transcript

This transcript has 19 exons, is annotated with 36 domains and features, is associated with 2 variant alleles and maps to 208 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000009386.11	gpatch1-201	3161	975aa	ENSDARP00000014631.10	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G1K2G6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000173613.2	gpatch1-203	293	98aa	ENSDARP00000142648.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000130085.3	gpatch1-202	742	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 19, Coding exons: 19, Transcript length: 3,161 bps, Translation length: 975 residues

Version

ENSDART00000009386.11

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.