Transcript: ENSDART00000005568.11 PDLIM3-201

Description

PDZ and LIM domain 3b [Source:ZFIN;Acc:ZDB-GENE-060130-104]

Location

About this transcript

This transcript has 7 exons, is annotated with 18 domains and features, is associated with 593 variant alleles and maps to 168 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000005568.11	PDLIM3-201	1353	315aa	ENSDARP00000015078.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0PWB8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000133775.3	PDLIM3-202	910	303aa	ENSDARP00000142605.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 1,353 bps, Translation length: 315 residues

Version

ENSDART00000005568.11

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.