Transcript: ENSDART00000133775.3 pdlim3b-202

Description

PDZ and LIM domain 3b [Source:ZFIN;Acc:ZDB-GENE-060130-104]

Gene Synonyms

alp, hm:zeh1190, sb:eu571

Location

Chromosome 14: 29,782,888-29,799,993 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 16 domains and features, is associated with 591 variant alleles and maps to 154 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000014248.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000005568.11	pdlim3b-201	1353	315aa	ENSDARP00000015078.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0PWB8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000133775.3	pdlim3b-202	910	303aa	ENSDARP00000142605.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A140LH75	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 910 bps, Translation length: 303 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000133775.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000133775.3 pdlim3b-202

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Transcript: ENSDART00000133775.3 pdlim3b-202

Summary

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