Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: VSX1 ENSBTAG00000003335

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Description

visual system homeobox 1 [Source:VGNC Symbol;Acc:VGNC:36845]

Location

Primary_assembly 13: 42,691,095-42,699,941 reverse strand.

ARS-UCD1.3:CM008180.2

About this gene

This gene has 3 transcripts (splice variants) and 174 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000004329.6	VSX1-201	1939	365aa	ENSBTAP00000004329.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A452DIK2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSBTAT00000112590.1	VSX1-202	1949	218aa	ENSBTAP00000082362.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000114840.1	VSX1-203	1002	237aa	ENSBTAP00000075341.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Summary

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