Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: MADCAM1 ENSSSCG00000039500

.

Description

mucosal vascular addressin cell adhesion molecule 1 [Source:VGNC Symbol;Acc:VGNC:108754]

Location

Primary_assembly 2: 77,784,612-77,789,067 reverse strand.

Sscrofa11.1:CM000813.5

About this gene

This gene has 3 transcripts (splice variants) and 96 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000051821.3	MADCAM1-203	1494	390aa	ENSSSCP00000036844.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1VWL9 Q2V6R9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000023867.4	MADCAM1-202	1028	255aa	ENSSSCP00000027887.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1VUH4 A3F9C4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000050430.3	MADCAM1-201	681	147aa	ENSSSCP00000031246.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1VQ32 A3F9C5	-

.

Summary

.

.