Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: RUNX1 ENSSSCG00000035537

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Description

RUNX family transcription factor 1 [Source:VGNC Symbol;Acc:VGNC:92516]

Location

Primary_assembly 13: 198,371,837-198,638,189 reverse strand.

Sscrofa11.1:CM000824.5

About this gene

This gene has 4 transcripts (splice variants), 206 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000042414.3	RUNX1-201	6202	480aa	ENSSSCP00000041677.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1TP86 F8SIP5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000013183.5	RUNX1-203	6195	453aa	ENSSSCP00000012832.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1TU96 F1SGX5	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000044458.3	RUNX1-202	6193	477aa	ENSSSCP00000041538.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AC48 A0A4X1TPB3	-
ENSSSCT00000072921.2	RUNX1-204	6003	389aa	ENSSSCP00000071757.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1TRG9 A0A5G2RC29	-

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Summary

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