Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: CUX1 ENSSSCG00000007681

.

Description

cut like homeobox 1 [Source:VGNC Symbol;Acc:VGNC:87093]

Location

Primary_assembly 3: 9,317,140-9,669,998 forward strand.

Sscrofa11.1:CM000814.5

About this gene

This gene has 7 transcripts (splice variants), 212 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000069971.2	CUX1-202	5930	1642aa	ENSSSCP00000065942.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QM40	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000037871.3	CUX1-203	5873	1623aa	ENSSSCP00000048247.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AWG4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000008422.5	CUX1-204	5677	1550aa	ENSSSCP00000008203.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RKF9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000039046.3	CUX1-201	4173	1390aa	ENSSSCP00000032553.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZM59	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000008424.5	CUX1-205	3458	770aa	ENSSSCP00000008205.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D2CIW7 F1RKF7	-
ENSSSCT00000083977.1	CUX1-207	2917	632aa	ENSSSCP00000067865.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QSG4 A0A8D1TUZ9	-
ENSSSCT00000069721.1	CUX1-206	2752	639aa	ENSSSCP00000073269.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2RAC2 A0A8D0T4Q8	-

.

Summary

.

.