Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Cellular component
- GO: Molecular function
- GO: Biological process
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: TTC39A ENSSSCG00000003875

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Description

tetratricopeptide repeat domain 39A [Source:VGNC Symbol;Acc:VGNC:94551]

Location

Primary_assembly 6: 160,806,629-160,854,489 forward strand.

Sscrofa11.1:CM000817.5

About this gene

This gene has 3 transcripts (splice variants), 205 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000063689.3	TTC39A-203	2758	581aa	ENSSSCP00000040824.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AA68 A0A8D0MW93	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000044468.1	TTC39A-202	2736	576aa	ENSSSCP00000053158.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287B9F3 A0A8D1UDJ5	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000004287.5	TTC39A-201	2662	578aa	ENSSSCP00000004188.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D0MTX8 A0A8D1V710	-

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Summary

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