Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CACNA1S ENSSSCG00000024784

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Description

calcium voltage-gated channel subunit alpha1 S [Source:VGNC Symbol;Acc:VGNC:95598]

Location

Primary_assembly 10: 23,502,898-23,568,058 reverse strand.

Sscrofa11.1:CM000821.5

About this gene

This gene has 10 transcripts (splice variants), 259 orthologues and 27 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000077373.2	CACNA1S-205	5825	1858aa	ENSSSCP00000062424.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QW60	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSSSCT00000089301.2	CACNA1S-206	6219	1726aa	ENSSSCP00000067817.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QSL4	-
ENSSSCT00000095095.1	CACNA1S-207	6219	1726aa	ENSSSCP00000079215.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FJZ0	-
ENSSSCT00000069476.2	CACNA1S-204	5972	1707aa	ENSSSCP00000064333.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QK29	-
ENSSSCT00000043789.3	CACNA1S-210	5804	1851aa	ENSSSCP00000054562.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BEQ2	-
ENSSSCT00000028700.4	CACNA1S-208	5684	1811aa	ENSSSCP00000024040.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I3LIY3	-
ENSSSCT00000066256.3	CACNA1S-203	5666	1805aa	ENSSSCP00000049504.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287B073	-
ENSSSCT00000097200.1	CACNA1S-209	5552	1767aa	ENSSSCP00000079017.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FL41	-
ENSSSCT00000070618.1	CACNA1S-202	5265	1754aa	ENSSSCP00000060866.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QRH0	-
ENSSSCT00000082326.2	CACNA1S-201	5142	1713aa	ENSSSCP00000069260.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2R4Z7	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data