Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Cellular component
- GO: Biological process
- GO: Molecular function
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PTPN5 ENSSSCG00000013358

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Description

protein tyrosine phosphatase non-receptor type 5 [Source:VGNC Symbol;Acc:VGNC:91981]

Location

Primary_assembly 2: 40,459,049-40,521,461 forward strand.

Sscrofa11.1:CM000813.5

About this gene

This gene has 3 transcripts (splice variants), 202 orthologues and 37 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000057185.3	PTPN5-202	3172	539aa	ENSSSCP00000033090.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZNQ0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000014589.5	PTPN5-203	2783	522aa	ENSSSCP00000014194.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1SFX5	-
ENSSSCT00000083666.1	PTPN5-201	1500	172aa	ENSSSCP00000065609.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2R4W8	-

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data