Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: LAMP2 ENSSSCG00000012604

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Description

lysosomal associated membrane protein 2 [Source:NCBI gene (formerly Entrezgene);Acc:100154598]

Location

Primary_assembly X: 98,556,710-98,623,940 reverse strand.

Sscrofa11.1:CM000830.5

About this gene

This gene has 4 transcripts (splice variants), 198 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000046980.3	LAMP2-203	6318	411aa	ENSSSCP00000052690.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287B836 A0A4X1W6B1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000013783.4	LAMP2-201	3688	411aa	ENSSSCP00000013402.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1W5H2 F1RUC0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000032655.4	LAMP2-202	3640	395aa	ENSSSCP00000030199.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	K7GQM7	-
ENSSSCT00000095122.1	LAMP2-204	3160	412aa	ENSSSCP00000076328.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1W6M8 A0A8W4FBV2	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data