Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: ENSSSCG00000009327

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Description

high mobility group box 1 [Source:NCBI gene (formerly Entrezgene);Acc:445521]

Location

Primary_assembly 11: 7,196,633-7,321,046 reverse strand.

Sscrofa11.1:CM000822.5

About this gene

This gene has 6 transcripts (splice variants), 258 orthologues and 23 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000098317.1	-	1385	241aa	ENSSSCP00000074860.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D0NNQ3 A0A8W4F6P8	-
ENSSSCT00000105240.1	-	1316	218aa	ENSSSCP00000079865.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FNJ1	-
ENSSSCT00000010221.4	-	1155	220aa	ENSSSCP00000009955.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F2Z594	-
ENSSSCT00000046065.2	-	1136	159aa	ENSSSCP00000054930.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BFU3 A0A4X1THK6	-
ENSSSCT00000044321.3	-	1094	196aa	ENSSSCP00000054523.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BEI7	-
ENSSSCT00000098183.1	-	969	215aa	ENSSSCP00000079872.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FKZ0	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data