Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: FAM161A ENSSSCG00000008378

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Description

FAM161 centrosomal protein A [Source:VGNC Symbol;Acc:VGNC:87916]

Location

Primary_assembly 3: 79,952,844-79,978,587 forward strand.

Sscrofa11.1:CM000814.5

About this gene

This gene has 3 transcripts (splice variants), 222 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000088853.2	FAM161A-201	2142	714aa	ENSSSCP00000061283.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1WCU7 A0A5G2QGZ1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSSSCT00000009173.5	FAM161A-203	2495	678aa	ENSSSCP00000008942.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1IVD5 F1SQN0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000041908.3	FAM161A-202	2430	664aa	ENSSSCP00000051762.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287B6Q9 A0A4X1WBM4	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data