Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Cellular component
- GO: Biological process
- GO: Molecular function
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PDE10A ENSSSCG00000004027

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Description

phosphodiesterase 10A [Source:VGNC Symbol;Acc:VGNC:91248]

Location

Primary_assembly 1: 2,829,411-3,392,651 forward strand.

Sscrofa11.1:CM000812.5

About this gene

This gene has 4 transcripts (splice variants), 205 orthologues and 20 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000041923.3	PDE10A-202	3409	1069aa	ENSSSCP00000052616.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287B941	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000081782.2	PDE10A-204	2740	846aa	ENSSSCP00000060335.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QE65	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000071222.2	PDE10A-201	2569	789aa	ENSSSCP00000069462.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2REW1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000004453.5	PDE10A-203	2406	801aa	ENSSSCP00000004352.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1SBW6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data