Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: NR1I2 ENSSSCG00000011890

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Description

nuclear receptor subfamily 1 group I member 2 [Source:VGNC Symbol;Acc:VGNC:90873]

Location

Primary_assembly 13: 140,364,075-140,406,112 reverse strand.

Sscrofa11.1:CM000824.5

About this gene

This gene has 6 transcripts (splice variants), 340 orthologues and 18 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000013011.4	NR1I2-205	3029	437aa	ENSSSCP00000012669.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A288CG33	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000085646.2	NR1I2-206	2885	398aa	ENSSSCP00000063631.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QIB3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000036791.2	NR1I2-203	2733	382aa	ENSSSCP00000032044.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZKP7	-
ENSSSCT00000013009.3	NR1I2-204	2440	379aa	ENSSSCP00000012667.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A288CG31	-
ENSSSCT00000046251.1	NR1I2-202	2030	412aa	ENSSSCP00000056580.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BJM8	-
ENSSSCT00000052890.3	NR1I2-201	922	306aa	ENSSSCP00000056091.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BHS9	-

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data