Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Cellular component
- GO: Molecular function
- GO: Biological process
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: Sema6c ENSRNOG00000021101

.

Description

semaphorin 6C [Source:RGD Symbol;Acc:3659]

Gene Synonyms

Sema Y

Location

Primary_assembly 2: 182,737,474-182,746,856 forward strand.

mRatBN7.2:CM026975.1

About this gene

This gene has 3 transcripts (splice variants), 269 orthologues, 19 paralogues and is associated with 7 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000050914.4	Sema6c-202	3277	960aa	ENSRNOP00000050221.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9WTL3-1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000028645.6	Sema6c-201	3181	928aa	ENSRNOP00000028645.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9WTL3-2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000090729.2	Sema6c-203	3173	920aa	ENSRNOP00000071511.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8R4U4	-

.

Summary

.

.