Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
  - Gene tree
  - Orthologues
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Ontologies
Phenotypes
Genetic Variation
- Variant table
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- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Scg2 ENSRNOG00000015055

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Description

secretogranin II [Source:RGD Symbol;Acc:3626]

Gene Synonyms

Chcg, sgII

Location

Primary_assembly 9: 80,803,075-80,821,097 reverse strand.

mRatBN7.2:CM026982.1

About this gene

This gene has 3 transcripts (splice variants), 251 orthologues and is associated with 2 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000105728.1	Scg2-202	3331	619aa	ENSRNOP00000078659.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A821	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSRNOT00000112421.1	Scg2-203	2964	619aa	ENSRNOP00000089801.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A821	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSRNOT00000020219.4	Scg2-201	2285	579aa	ENSRNOP00000020219.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G3V7X2	-

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Summary

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