Gene: Chd9 ENSRNOG00000049302

Description

chromodomain helicase DNA binding protein 9 [Source:RGD Symbol;Acc:1306795]

Gene Synonyms

CReMM, LOC307726

Location

Primary_assembly 19: 15,942,687-16,164,556 reverse strand.

mRatBN7.2:CM026992.1

About this gene

This gene has 3 transcripts (splice variants), 216 orthologues, 32 paralogues and is associated with 1 phenotype.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000075991.3	Chd9-201	12307	2883aa	ENSRNOP00000068278.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A096MJV7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSRNOT00000076138.2	Chd9-202	10715	2867aa	ENSRNOP00000067932.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A096MIZ4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000078786.2	Chd9-203	10281	2882aa	ENSRNOP00000070362.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2JXQ2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,