Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Cellular component
- GO: Molecular function
- GO: Biological process
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
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Gene: Smgc ENSRNOG00000037025

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Description

submandibular gland protein C [Source:RGD Symbol;Acc:1302995]

Location

Primary_assembly 7: 123,017,896-123,048,211 forward strand.

mRatBN7.2:CM026980.1

About this gene

This gene has 4 transcripts (splice variants) and 5 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000042254.6	Smgc-201	2779	674aa	ENSRNOP00000050729.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9PTP9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSRNOT00000104399.1	Smgc-202	2712	665aa	ENSRNOP00000091795.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AU37	-
ENSRNOT00000111436.1	Smgc-203	1194	159aa	ENSRNOP00000096019.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AQ67	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000119061.1	Smgc-204	1104	129aa	ENSRNOP00000090766.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AAS6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data