Gene: Rp9 ENSRNOG00000029456

Description

RP9, pre-mRNA splicing factor [Source:RGD Symbol;Acc:1559759]

Gene Synonyms

LOC363032, RGD1559759, Rp9h

Location

Primary_assembly 8: 20,941,362-21,005,175 reverse strand.

mRatBN7.2:CM026981.1

About this gene

This gene has 3 transcripts (splice variants), 75 orthologues and is associated with 5 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000107195.1	Rp9-202	1106	211aa	ENSRNOP00000087499.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A7C2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000065367.3	Rp9-201	728	154aa	ENSRNOP00000060995.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1LYD8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000116516.1	Rp9-203	593	156aa	ENSRNOP00000091532.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AFT5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,