Gene: Cfap46 ENSRNOG00000027374

Description

cilia and flagella associated protein 46 [Source:RGD Symbol;Acc:1559985]

Gene Synonyms

AABR07005985.1, LOC499282, RGD1559985, Ttc40

Location

Primary_assembly 1: 194,403,211-194,482,730 reverse strand.

mRatBN7.2:CM026974.1

About this gene

This gene has 3 transcripts (splice variants), 188 orthologues and is associated with 4 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000029027.5	Cfap46-201	8079	2589aa	ENSRNOP00000031025.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D3Z8S9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSRNOT00000074298.2	Cfap46-203	7971	2553aa	ENSRNOP00000065028.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M0R6H6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000054886.5	Cfap46-202	1158	270aa	ENSRNOP00000051770.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1M1E7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,