Gene: Tcof1 ENSRNOG00000026108

Description

treacle ribosome biogenesis factor 1 [Source:RGD Symbol;Acc:1309850]

Gene Synonyms

LOC291571

Location

Primary_assembly 18: 54,267,026-54,300,324 reverse strand.

mRatBN7.2:CM026991.1

About this gene

This gene has 4 transcripts (splice variants), 104 orthologues and is associated with 9 phenotypes.

Transcripts

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Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000045041.6	Tcof1-201	4657	1356aa	ENSRNOP00000045755.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D4A206	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000117429.1	Tcof1-204	4775	1274aa	ENSRNOP00000090342.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AAL0	-
ENSRNOT00000115228.1	Tcof1-203	4610	1354aa	ENSRNOP00000087788.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A9F9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000096741.1	Tcof1-202	4544	1321aa	ENSRNOP00000095414.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AJL5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,