Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Sf1 ENSRNOG00000021085

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Description

splicing factor 1 [Source:RGD Symbol;Acc:620645]

Gene Synonyms

Zfp162

Location

Primary_assembly 1: 203,670,018-203,684,330 forward strand.

mRatBN7.2:CM026974.1

About this gene

This gene has 4 transcripts (splice variants), 185 orthologues, 4 paralogues and is associated with 9 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000028628.8	Sf1-201	3139	649aa	ENSRNOP00000028628.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1LSC3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000100785.1	Sf1-203	3487	561aa	ENSRNOP00000079109.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZQ56	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000044866.6	Sf1-202	2647	502aa	ENSRNOP00000041676.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1LM37	-
ENSRNOT00000110004.1	Sf1-204	2307	638aa	ENSRNOP00000082510.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6G7I2	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data