Gene: Simc1 ENSRNOG00000016932

Description

SUMO-interacting motifs containing 1 [Source:RGD Symbol;Acc:2319689]

Gene Synonyms

LOC100361684

Location

Primary_assembly 17: 10,061,757-10,106,910 reverse strand.

mRatBN7.2:CM026990.1

About this gene

This gene has 3 transcripts (splice variants), 184 orthologues, 2 paralogues and is associated with 3 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000064274.5	Simc1-203	4571	1277aa	ENSRNOP00000060156.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8L2QVN4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSRNOT00000044559.7	Simc1-202	4432	1252aa	ENSRNOP00000043680.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D3ZCP7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000022980.6	Simc1-201	2016	453aa	ENSRNOP00000022980.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D3Z920	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,