Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Capn5 ENSRNOG00000014251

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Description

calpain 5 [Source:RGD Symbol;Acc:620084]

Gene Synonyms

Htra3

Location

Primary_assembly 1: 152,416,252-152,472,923 reverse strand.

mRatBN7.2:CM026974.1

About this gene

This gene has 2 transcripts (splice variants), 284 orthologues, 19 paralogues and is associated with 4 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000019370.8	Capn5-201	4367	750aa	ENSRNOP00000019370.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G3V7U6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000083055.2	Capn5-202	4236	640aa	ENSRNOP00000070614.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2JYD8	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data