Gene: Litaf ENSRNOG00000002520

Description

lipopolysaccharide-induced TNF factor [Source:RGD Symbol;Acc:69294]

Gene Synonyms

EET-1, Pig7

Location

Primary_assembly 10: 4,625,552-4,692,763 forward strand.

mRatBN7.2:CM026983.1

About this gene

This gene has 3 transcripts (splice variants), 206 orthologues, 2 paralogues and is associated with 10 phenotypes.

Transcripts

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Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000119324.1	Litaf-203	2806	203aa	ENSRNOP00000080863.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZRT4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000108567.1	Litaf-202	2372	161aa	ENSRNOP00000085735.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B2RYP2 P0C0T0	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000003412.4	Litaf-201	2003	159aa	ENSRNOP00000003412.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8L2Q1K5	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,