Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: MSR1 ENSPTRG00000020013

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Description

macrophage scavenger receptor 1 [Source:VGNC Symbol;Acc:VGNC:14634]

Location

Chromosome 8: 15,178,631-15,265,783 reverse strand.

Pan_tro_3.0:CM000322.4

About this gene

This gene has 5 transcripts (splice variants), 96 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000106043.1	MSR1-204	2057	460aa	ENSPTRP00000092994.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TUU0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSPTRT00000080363.1	MSR1-201	5854	451aa	ENSPTRP00000078656.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3S2Z4 A0A6D2XTS6	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSPTRT00000076921.1	MSR1-202	3802	451aa	ENSPTRP00000070959.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3S2Z4 A0A6D2XTS6	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSPTRT00000083405.1	MSR1-205	2975	358aa	ENSPTRP00000075288.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SE71 A0A6D2WJ56	-
ENSPTRT00000037073.4	MSR1-203	1167	388aa	ENSPTRP00000034258.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2J8K4E3 A0A6D2VV79	-

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Summary

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