Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Cellular component
- GO: Biological process
- GO: Molecular function
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Col25a1 MGP_PahariEiJ_G0027082

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Description

collagen type XXV alpha 1 chain [Source:NCBI gene;Acc:110319978]

Location

Chromosome 4: 118,179,955-118,645,388 forward strand.

PAHARI_EIJ_v1.1:LT608287.1

About this gene

This gene has 6 transcripts (splice variants), 138 orthologues and 37 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
MGP_PahariEiJ_T0071445.1	Col25a1-205	2626	666aa	MGP_PahariEiJ_P0071445	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_PahariEiJ_T0071443.1	Col25a1-203	6682	640aa	MGP_PahariEiJ_P0071443	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_PahariEiJ_T0071444.1	Col25a1-204	3759	593aa	MGP_PahariEiJ_P0071444	Nonsense mediated decay	-
MGP_PahariEiJ_T0071441.1	Col25a1-201	1061	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-
MGP_PahariEiJ_T0071442.1	Col25a1-202	3525	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
MGP_PahariEiJ_T0071446.1	Col25a1-206	2670	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

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Summary

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