Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Shmt1 MGP_PahariEiJ_G0017594

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Description

serine hydroxymethyltransferase 1 [Source:NCBI gene;Acc:110331359]

Location

Chromosome 14: 28,838,076-28,862,770 reverse strand.

PAHARI_EIJ_v1.1:LT608308.1

About this gene

This gene has 11 transcripts (splice variants), 215 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
MGP_PahariEiJ_T0033821.1	Shmt1-204	1324	440aa	MGP_PahariEiJ_P0033821	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_PahariEiJ_T0033819.1	Shmt1-202	1318	438aa	MGP_PahariEiJ_P0033819	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_PahariEiJ_T0033822.1	Shmt1-205	1319	121aa	MGP_PahariEiJ_P0033822	Nonsense mediated decay	-
MGP_PahariEiJ_T0033818.1	Shmt1-201	1281	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-
MGP_PahariEiJ_T0033828.1	Shmt1-211	513	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-
MGP_PahariEiJ_T0033827.1	Shmt1-210	413	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-
MGP_PahariEiJ_T0033826.1	Shmt1-209	1284	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
MGP_PahariEiJ_T0033825.1	Shmt1-208	583	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
MGP_PahariEiJ_T0033823.1	Shmt1-206	582	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
MGP_PahariEiJ_T0033824.1	Shmt1-207	443	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
MGP_PahariEiJ_T0033820.1	Shmt1-203	3096	478aa	MGP_PahariEiJ_P0033820	Unknown likely coding	-

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Summary

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