Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: Ythdc1 MGP_PahariEiJ_G0017126

.

Description

YTH domain containing 1 [Source:NCBI gene;Acc:110330252]

Location

Chromosome 13: 76,056,975-76,090,303 forward strand.

PAHARI_EIJ_v1.1:LT608299.1

About this gene

This gene has 9 transcripts (splice variants), 202 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
MGP_PahariEiJ_T0032046.1	Ythdc1-204	2964	736aa	MGP_PahariEiJ_P0032046	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_PahariEiJ_T0032044.1	Ythdc1-202	3289	728aa	MGP_PahariEiJ_P0032044	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_PahariEiJ_T0032043.1	Ythdc1-201	3242	710aa	MGP_PahariEiJ_P0032043	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_PahariEiJ_T0032045.1	Ythdc1-203	4364	545aa	MGP_PahariEiJ_P0032045	Nonsense mediated decay	-
MGP_PahariEiJ_T0032050.1	Ythdc1-208	593	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-
MGP_PahariEiJ_T0032048.1	Ythdc1-206	6259	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
MGP_PahariEiJ_T0032049.1	Ythdc1-207	3498	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
MGP_PahariEiJ_T0032047.1	Ythdc1-205	2788	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
MGP_PahariEiJ_T0032051.1	Ythdc1-209	1250	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

.

Summary

.

.